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C8orf33 (chromosome 8 open reading frame 33)

Identity

Alias_symbol (synonym)FLJ20989
Other alias-
HGNC (Hugo) C8orf33
LocusID (NCBI) 65265
Atlas_Id 61281
Location 8q24.3  [Link to chromosome band 8q24]
Location_base_pair Starts at 145052438 and ends at 145056030 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
C8orf33 (8q24.3) / C8orf33 (8q24.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C8orf33   26104
Cards
Entrez_Gene (NCBI)C8orf33  65265  chromosome 8 open reading frame 33
Aliases
GeneCards (Weizmann)C8orf33
Ensembl hg19 (Hinxton)ENSG00000182307 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182307 [Gene_View]  chr8:145052438-145056030 [Contig_View]  C8orf33 [Vega]
ICGC DataPortalENSG00000182307
TCGA cBioPortalC8orf33
AceView (NCBI)C8orf33
Genatlas (Paris)C8orf33
WikiGenes65265
SOURCE (Princeton)C8orf33
Genetics Home Reference (NIH)C8orf33
Genomic and cartography
GoldenPath hg38 (UCSC)C8orf33  -     chr8:145052438-145056030 +  8q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C8orf33  -     8q24.3   [Description]    (hg19-Feb_2009)
EnsemblC8orf33 - 8q24.3 [CytoView hg19]  C8orf33 - 8q24.3 [CytoView hg38]
Mapping of homologs : NCBIC8orf33 [Mapview hg19]  C8orf33 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF086170 AK024642 BC010001 BC015181 BX648996
RefSeq transcript (Entrez)NM_023080
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C8orf33
Cluster EST : UnigeneHs.169615 [ NCBI ]
CGAP (NCI)Hs.169615
Alternative Splicing GalleryENSG00000182307
Gene ExpressionC8orf33 [ NCBI-GEO ]   C8orf33 [ EBI - ARRAY_EXPRESS ]   C8orf33 [ SEEK ]   C8orf33 [ MEM ]
Gene Expression Viewer (FireBrowse)C8orf33 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)65265
GTEX Portal (Tissue expression)C8orf33
Human Protein AtlasENSG00000182307-C8orf33 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H7E9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H7E9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H7E9
Splice isoforms : SwissVarQ9H7E9
PhosPhoSitePlusQ9H7E9
Domains : Interpro (EBI)DUF4615   
Domain families : Pfam (Sanger)DUF4615 (PF15393)   
Domain families : Pfam (NCBI)pfam15393   
Conserved Domain (NCBI)C8orf33
DMDM Disease mutations65265
Blocks (Seattle)C8orf33
SuperfamilyQ9H7E9
Human Protein Atlas [tissue]ENSG00000182307-C8orf33 [tissue]
Peptide AtlasQ9H7E9
HPRD07951
IPIIPI00011997   IPI00867735   
Protein Interaction databases
DIP (DOE-UCLA)Q9H7E9
IntAct (EBI)Q9H7E9
FunCoupENSG00000182307
BioGRIDC8orf33
STRING (EMBL)C8orf33
ZODIACC8orf33
Ontologies - Pathways
QuickGOQ9H7E9
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkC8orf33
Atlas of Cancer Signalling NetworkC8orf33
Wikipedia pathwaysC8orf33
Orthology - Evolution
OrthoDB65265
GeneTree (enSembl)ENSG00000182307
Phylogenetic Trees/Animal Genes : TreeFamC8orf33
HOVERGENQ9H7E9
HOGENOMQ9H7E9
Homologs : HomoloGeneC8orf33
Homology/Alignments : Family Browser (UCSC)C8orf33
Gene fusions - Rearrangements
Fusion: Tumor Portal C8orf33
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC8orf33 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C8orf33
dbVarC8orf33
ClinVarC8orf33
1000_GenomesC8orf33 
Exome Variant ServerC8orf33
ExAC (Exome Aggregation Consortium)ENSG00000182307
GNOMAD BrowserENSG00000182307
Genetic variants : HAPMAP65265
Genomic Variants (DGV)C8orf33 [DGVbeta]
DECIPHERC8orf33 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC8orf33 
Mutations
ICGC Data PortalC8orf33 
TCGA Data PortalC8orf33 
Broad Tumor PortalC8orf33
OASIS PortalC8orf33 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC8orf33  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC8orf33
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C8orf33
DgiDB (Drug Gene Interaction Database)C8orf33
DoCM (Curated mutations)C8orf33 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C8orf33 (select a term)
intoGenC8orf33
Cancer3DC8orf33(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC8orf33
Genetic Testing Registry C8orf33
NextProtQ9H7E9 [Medical]
TSGene65265
GENETestsC8orf33
Target ValidationC8orf33
Huge Navigator C8orf33 [HugePedia]
snp3D : Map Gene to Disease65265
BioCentury BCIQC8orf33
ClinGenC8orf33
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD65265
Chemical/Pharm GKB GenePA142672352
Clinical trialC8orf33
Miscellaneous
canSAR (ICR)C8orf33 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC8orf33
EVEXC8orf33
GoPubMedC8orf33
iHOPC8orf33
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:40:51 CET 2017

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