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C8orf34 (chromosome 8 open reading frame 34)

Identity

Alias_symbol (synonym)vest-1
VEST1
Other aliasVEST-1
HGNC (Hugo) C8orf34
LocusID (NCBI) 116328
Atlas_Id 54182
Location 8q13.2  [Link to chromosome band 8q13]
Location_base_pair Starts at 69242957 and ends at 69448062 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ADCK5 (8q24.3) / C8orf34 (8q13.2)C8orf34 (8q13.2) / MET (7q31.2)C8orf34 (8q13.2) / MYBL1 (8q13.1)
HNRNPU (1q44) / C8orf34 (8q13.2)PANK1 (10q23.31) / C8orf34 (8q13.2)RGS7 (1q43) / C8orf34 (8q13.2)
PANK1 10q23.31 / C8orf34 8q13.2RGS7 1q43 / C8orf34 8q13.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C8orf34   30905
Cards
Entrez_Gene (NCBI)C8orf34  116328  chromosome 8 open reading frame 34
AliasesVEST-1; VEST1
GeneCards (Weizmann)C8orf34
Ensembl hg19 (Hinxton)ENSG00000165084 [Gene_View]  chr8:69242957-69448062 [Contig_View]  C8orf34 [Vega]
Ensembl hg38 (Hinxton)ENSG00000165084 [Gene_View]  chr8:69242957-69448062 [Contig_View]  C8orf34 [Vega]
ICGC DataPortalENSG00000165084
TCGA cBioPortalC8orf34
AceView (NCBI)C8orf34
Genatlas (Paris)C8orf34
WikiGenes116328
SOURCE (Princeton)C8orf34
Genetics Home Reference (NIH)C8orf34
Genomic and cartography
GoldenPath hg19 (UCSC)C8orf34  -     chr8:69242957-69448062 +  8q13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C8orf34  -     8q13.2   [Description]    (hg38-Dec_2013)
EnsemblC8orf34 - 8q13.2 [CytoView hg19]  C8orf34 - 8q13.2 [CytoView hg38]
Mapping of homologs : NCBIC8orf34 [Mapview hg19]  C8orf34 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB056652 AK094191 AK094650 AK291436 AL834454
RefSeq transcript (Entrez)NM_001195639 NM_052958
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_008183 NW_004929339
Consensus coding sequences : CCDS (NCBI)C8orf34
Cluster EST : UnigeneHs.491941 [ NCBI ]
CGAP (NCI)Hs.491941
Alternative Splicing GalleryENSG00000165084
Gene ExpressionC8orf34 [ NCBI-GEO ]   C8orf34 [ EBI - ARRAY_EXPRESS ]   C8orf34 [ SEEK ]   C8orf34 [ MEM ]
Gene Expression Viewer (FireBrowse)C8orf34 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)116328
GTEX Portal (Tissue expression)C8orf34
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ49A92   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ49A92  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ49A92
Splice isoforms : SwissVarQ49A92
PhosPhoSitePlusQ49A92
Domains : Interpro (EBI)cAMP_dep_PK_reg_su_I/II_a/b   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C8orf34
DMDM Disease mutations116328
Blocks (Seattle)C8orf34
SuperfamilyQ49A92
Human Protein AtlasENSG00000165084
Peptide AtlasQ49A92
HPRD18281
IPIIPI00395369   IPI00298609   IPI00383930   IPI00044650   IPI00890751   IPI00977306   
Protein Interaction databases
DIP (DOE-UCLA)Q49A92
IntAct (EBI)Q49A92
FunCoupENSG00000165084
BioGRIDC8orf34
STRING (EMBL)C8orf34
ZODIACC8orf34
Ontologies - Pathways
QuickGOQ49A92
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC8orf34
Atlas of Cancer Signalling NetworkC8orf34
Wikipedia pathwaysC8orf34
Orthology - Evolution
OrthoDB116328
GeneTree (enSembl)ENSG00000165084
Phylogenetic Trees/Animal Genes : TreeFamC8orf34
HOVERGENQ49A92
HOGENOMQ49A92
Homologs : HomoloGeneC8orf34
Homology/Alignments : Family Browser (UCSC)C8orf34
Gene fusions - Rearrangements
Fusion : MitelmanC8orf34/MYBL1 [8q13.2/8q13.1]  
Fusion : MitelmanPANK1/C8orf34 [10q23.31/8q13.2]  [t(8;10)(q13;q23)]  
Fusion : MitelmanRGS7/C8orf34 [1q43/8q13.2]  [t(1;8)(q43;q13)]  
Fusion: TCGAPANK1 10q23.31 C8orf34 8q13.2 BRCA
Fusion: TCGARGS7 1q43 C8orf34 8q13.2 LGG
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC8orf34 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C8orf34
dbVarC8orf34
ClinVarC8orf34
1000_GenomesC8orf34 
Exome Variant ServerC8orf34
ExAC (Exome Aggregation Consortium)C8orf34 (select the gene name)
Genetic variants : HAPMAP116328
Genomic Variants (DGV)C8orf34 [DGVbeta]
DECIPHER (Syndromes)8:69242957-69448062  ENSG00000165084
CONAN: Copy Number AnalysisC8orf34 
Mutations
ICGC Data PortalC8orf34 
TCGA Data PortalC8orf34 
Broad Tumor PortalC8orf34
OASIS PortalC8orf34 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC8orf34  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC8orf34
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C8orf34
DgiDB (Drug Gene Interaction Database)C8orf34
DoCM (Curated mutations)C8orf34 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C8orf34 (select a term)
intoGenC8orf34
Cancer3DC8orf34(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC8orf34
Genetic Testing Registry C8orf34
NextProtQ49A92 [Medical]
TSGene116328
GENETestsC8orf34
Huge Navigator C8orf34 [HugePedia]
snp3D : Map Gene to Disease116328
BioCentury BCIQC8orf34
ClinGenC8orf34
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD116328
Chemical/Pharm GKB GenePA142672353
Clinical trialC8orf34
Miscellaneous
canSAR (ICR)C8orf34 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC8orf34
EVEXC8orf34
GoPubMedC8orf34
iHOPC8orf34
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:58:20 CET 2017

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