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C8orf37 (chromosome 8 open reading frame 37)

Identity

Alias_symbol (synonym)FLJ30600
CORD16
RP64
BBS21
Other aliassmalltalk
HGNC (Hugo) C8orf37
LocusID (NCBI) 157657
Atlas_Id 61282
Location 8q22.1  [Link to chromosome band 8q22]
Location_base_pair Starts at 95244913 and ends at 95269234 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ACER2 (9p22.1) / C8orf37 (8q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C8orf37   27232
Cards
Entrez_Gene (NCBI)C8orf37  157657  chromosome 8 open reading frame 37
AliasesBBS21; CORD16; RP64; smalltalk
GeneCards (Weizmann)C8orf37
Ensembl hg19 (Hinxton)ENSG00000156172 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000156172 [Gene_View]  chr8:95244913-95269234 [Contig_View]  C8orf37 [Vega]
ICGC DataPortalENSG00000156172
TCGA cBioPortalC8orf37
AceView (NCBI)C8orf37
Genatlas (Paris)C8orf37
WikiGenes157657
SOURCE (Princeton)C8orf37
Genetics Home Reference (NIH)C8orf37
Genomic and cartography
GoldenPath hg38 (UCSC)C8orf37  -     chr8:95244913-95269234 -  8q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C8orf37  -     8q22.1   [Description]    (hg19-Feb_2009)
EnsemblC8orf37 - 8q22.1 [CytoView hg19]  C8orf37 - 8q22.1 [CytoView hg38]
Mapping of homologs : NCBIC8orf37 [Mapview hg19]  C8orf37 [Mapview hg38]
OMIM268000   614477   614500   617406   
Gene and transcription
Genbank (Entrez)AA897574 AK055162 BC036855 BC150301 BC172331
RefSeq transcript (Entrez)NM_177965
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C8orf37
Cluster EST : UnigeneHs.548157 [ NCBI ]
CGAP (NCI)Hs.548157
Alternative Splicing GalleryENSG00000156172
Gene ExpressionC8orf37 [ NCBI-GEO ]   C8orf37 [ EBI - ARRAY_EXPRESS ]   C8orf37 [ SEEK ]   C8orf37 [ MEM ]
Gene Expression Viewer (FireBrowse)C8orf37 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)157657
GTEX Portal (Tissue expression)C8orf37
Human Protein AtlasENSG00000156172-C8orf37 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96NL8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96NL8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96NL8
Splice isoforms : SwissVarQ96NL8
PhosPhoSitePlusQ96NL8
Domains : Interpro (EBI)C8orf37   
Domain families : Pfam (Sanger)RMP (PF14996)   
Domain families : Pfam (NCBI)pfam14996   
Conserved Domain (NCBI)C8orf37
DMDM Disease mutations157657
Blocks (Seattle)C8orf37
SuperfamilyQ96NL8
Human Protein Atlas [tissue]ENSG00000156172-C8orf37 [tissue]
Peptide AtlasQ96NL8
HPRD14104
IPIIPI00043741   
Protein Interaction databases
DIP (DOE-UCLA)Q96NL8
IntAct (EBI)Q96NL8
FunCoupENSG00000156172
BioGRIDC8orf37
STRING (EMBL)C8orf37
ZODIACC8orf37
Ontologies - Pathways
QuickGOQ96NL8
Ontology : AmiGOprotein binding  cytoplasm  cytosol  plasma membrane  cell junction  ciliary base  
Ontology : EGO-EBIprotein binding  cytoplasm  cytosol  plasma membrane  cell junction  ciliary base  
NDEx NetworkC8orf37
Atlas of Cancer Signalling NetworkC8orf37
Wikipedia pathwaysC8orf37
Orthology - Evolution
OrthoDB157657
GeneTree (enSembl)ENSG00000156172
Phylogenetic Trees/Animal Genes : TreeFamC8orf37
HOVERGENQ96NL8
HOGENOMQ96NL8
Homologs : HomoloGeneC8orf37
Homology/Alignments : Family Browser (UCSC)C8orf37
Gene fusions - Rearrangements
Fusion: Tumor Portal C8orf37
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC8orf37 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C8orf37
dbVarC8orf37
ClinVarC8orf37
1000_GenomesC8orf37 
Exome Variant ServerC8orf37
ExAC (Exome Aggregation Consortium)ENSG00000156172
GNOMAD BrowserENSG00000156172
Genetic variants : HAPMAP157657
Genomic Variants (DGV)C8orf37 [DGVbeta]
DECIPHERC8orf37 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC8orf37 
Mutations
ICGC Data PortalC8orf37 
TCGA Data PortalC8orf37 
Broad Tumor PortalC8orf37
OASIS PortalC8orf37 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC8orf37  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC8orf37
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Eye diseases - LOVD
BioMutasearch C8orf37
DgiDB (Drug Gene Interaction Database)C8orf37
DoCM (Curated mutations)C8orf37 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C8orf37 (select a term)
intoGenC8orf37
Cancer3DC8orf37(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM268000    614477    614500    617406   
Orphanet
MedgenC8orf37
Genetic Testing Registry C8orf37
NextProtQ96NL8 [Medical]
TSGene157657
GENETestsC8orf37
Target ValidationC8orf37
Huge Navigator C8orf37 [HugePedia]
snp3D : Map Gene to Disease157657
BioCentury BCIQC8orf37
ClinGenC8orf37
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD157657
Chemical/Pharm GKB GenePA142672356
Clinical trialC8orf37
Miscellaneous
canSAR (ICR)C8orf37 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC8orf37
EVEXC8orf37
GoPubMedC8orf37
iHOPC8orf37
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:40:51 CET 2017

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