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C8orf44-SGK3 (C8orf44-SGK3 readthrough)

Identity

Other alias-
HGNC (Hugo) C8orf44-SGK3
LocusID (NCBI) 100533105
Atlas_Id 56274
Location 8q13.1  [Link to chromosome band 8q13]
Location_base_pair Starts at 66667552 and ends at 66862022 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SNX5 (20p11.23) / C8orf44-SGK3 (8q13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C8orf44-SGK3   48354
Cards
Entrez_Gene (NCBI)C8orf44-SGK3  100533105  C8orf44-SGK3 readthrough
Aliases
GeneCards (Weizmann)C8orf44-SGK3
Ensembl hg19 (Hinxton)ENSG00000270024 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000270024 [Gene_View]  chr8:66667552-66862022 [Contig_View]  C8orf44-SGK3 [Vega]
ICGC DataPortalENSG00000270024
TCGA cBioPortalC8orf44-SGK3
AceView (NCBI)C8orf44-SGK3
Genatlas (Paris)C8orf44-SGK3
WikiGenes100533105
SOURCE (Princeton)C8orf44-SGK3
Genetics Home Reference (NIH)C8orf44-SGK3
Genomic and cartography
GoldenPath hg38 (UCSC)C8orf44-SGK3  -     chr8:66667552-66862022 +  8q13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C8orf44-SGK3  -     8q13.1   [Description]    (hg19-Feb_2009)
EnsemblC8orf44-SGK3 - 8q13.1 [CytoView hg19]  C8orf44-SGK3 - 8q13.1 [CytoView hg38]
Mapping of homologs : NCBIC8orf44-SGK3 [Mapview hg19]  C8orf44-SGK3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001204173
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C8orf44-SGK3
Cluster EST : UnigeneHs.613417 [ NCBI ]
CGAP (NCI)Hs.613417
Alternative Splicing GalleryENSG00000270024
Gene ExpressionC8orf44-SGK3 [ NCBI-GEO ]   C8orf44-SGK3 [ EBI - ARRAY_EXPRESS ]   C8orf44-SGK3 [ SEEK ]   C8orf44-SGK3 [ MEM ]
Gene Expression Viewer (FireBrowse)C8orf44-SGK3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100533105
GTEX Portal (Tissue expression)C8orf44-SGK3
Human Protein AtlasENSG00000270024-C8orf44-SGK3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96BR1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96BR1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96BR1
Splice isoforms : SwissVarQ96BR1
Catalytic activity : Enzyme2.7.11.1 [ Enzyme-Expasy ]   2.7.11.12.7.11.1 [ IntEnz-EBI ]   2.7.11.1 [ BRENDA ]   2.7.11.1 [ KEGG ]   
PhosPhoSitePlusQ96BR1
Domaine pattern : Prosite (Expaxy)AGC_KINASE_CTER (PS51285)    PROTEIN_KINASE_ATP (PS00107)    PROTEIN_KINASE_DOM (PS50011)    PROTEIN_KINASE_ST (PS00108)    PX (PS50195)   
Domains : Interpro (EBI)AGC-kinase_C    Kinase-like_dom    Phox    Pkinase_C    Prot_kinase_dom    Protein_kinase_ATP_BS    Ser/Thr_kinase_AS   
Domain families : Pfam (Sanger)Pkinase (PF00069)    Pkinase_C (PF00433)    PX (PF00787)   
Domain families : Pfam (NCBI)pfam00069    pfam00433    pfam00787   
Domain families : Smart (EMBL)PX (SM00312)  S_TK_X (SM00133)  S_TKc (SM00220)  
Conserved Domain (NCBI)C8orf44-SGK3
DMDM Disease mutations100533105
Blocks (Seattle)C8orf44-SGK3
SuperfamilyQ96BR1
Human Protein Atlas [tissue]ENSG00000270024-C8orf44-SGK3 [tissue]
Peptide AtlasQ96BR1
Protein Interaction databases
DIP (DOE-UCLA)Q96BR1
IntAct (EBI)Q96BR1
FunCoupENSG00000270024
BioGRIDC8orf44-SGK3
STRING (EMBL)C8orf44-SGK3
ZODIACC8orf44-SGK3
Ontologies - Pathways
QuickGOQ96BR1
Ontology : AmiGOregulation of cell growth  protein kinase activity  protein serine/threonine kinase activity  calcium channel regulator activity  protein binding  ATP binding  early endosome  cytosol  protein phosphorylation  response to stress  potassium channel regulator activity  sodium channel regulator activity  chloride channel regulator activity  peptidyl-serine phosphorylation  regulation of cell migration  cytoplasmic vesicle  positive regulation of transporter activity  ion transmembrane transport  phosphatidylinositol binding  intracellular signal transduction  regulation of cell proliferation  regulation of apoptotic process  regulation of sequence-specific DNA binding transcription factor activity  recycling endosome  
Ontology : EGO-EBIregulation of cell growth  protein kinase activity  protein serine/threonine kinase activity  calcium channel regulator activity  protein binding  ATP binding  early endosome  cytosol  protein phosphorylation  response to stress  potassium channel regulator activity  sodium channel regulator activity  chloride channel regulator activity  peptidyl-serine phosphorylation  regulation of cell migration  cytoplasmic vesicle  positive regulation of transporter activity  ion transmembrane transport  phosphatidylinositol binding  intracellular signal transduction  regulation of cell proliferation  regulation of apoptotic process  regulation of sequence-specific DNA binding transcription factor activity  recycling endosome  
Pathways : KEGGFoxO signaling pathway    PI3K-Akt signaling pathway   
NDEx NetworkC8orf44-SGK3
Atlas of Cancer Signalling NetworkC8orf44-SGK3
Wikipedia pathwaysC8orf44-SGK3
Orthology - Evolution
OrthoDB100533105
GeneTree (enSembl)ENSG00000270024
Phylogenetic Trees/Animal Genes : TreeFamC8orf44-SGK3
HOVERGENQ96BR1
HOGENOMQ96BR1
Homologs : HomoloGeneC8orf44-SGK3
Homology/Alignments : Family Browser (UCSC)C8orf44-SGK3
Gene fusions - Rearrangements
Tumor Fusion PortalC8orf44-SGK3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC8orf44-SGK3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C8orf44-SGK3
dbVarC8orf44-SGK3
ClinVarC8orf44-SGK3
1000_GenomesC8orf44-SGK3 
Exome Variant ServerC8orf44-SGK3
ExAC (Exome Aggregation Consortium)ENSG00000270024
GNOMAD BrowserENSG00000270024
Genetic variants : HAPMAP100533105
Genomic Variants (DGV)C8orf44-SGK3 [DGVbeta]
DECIPHERC8orf44-SGK3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC8orf44-SGK3 
Mutations
ICGC Data PortalC8orf44-SGK3 
TCGA Data PortalC8orf44-SGK3 
Broad Tumor PortalC8orf44-SGK3
OASIS PortalC8orf44-SGK3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDC8orf44-SGK3
BioMutasearch C8orf44-SGK3
DgiDB (Drug Gene Interaction Database)C8orf44-SGK3
DoCM (Curated mutations)C8orf44-SGK3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C8orf44-SGK3 (select a term)
intoGenC8orf44-SGK3
Cancer3DC8orf44-SGK3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETC8orf44-SGK3
MedgenC8orf44-SGK3
Genetic Testing Registry C8orf44-SGK3
NextProtQ96BR1 [Medical]
TSGene100533105
GENETestsC8orf44-SGK3
Target ValidationC8orf44-SGK3
Huge Navigator C8orf44-SGK3 [HugePedia]
snp3D : Map Gene to Disease100533105
BioCentury BCIQC8orf44-SGK3
ClinGenC8orf44-SGK3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100533105
Clinical trialC8orf44-SGK3
Miscellaneous
canSAR (ICR)C8orf44-SGK3 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC8orf44-SGK3
EVEXC8orf44-SGK3
GoPubMedC8orf44-SGK3
iHOPC8orf44-SGK3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:05:37 CET 2017

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