Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C8orf44 (chromosome 8 open reading frame 44)

Identity

Alias_symbol (synonym)FLJ11267
Other alias-
HGNC (Hugo) C8orf44
LocusID (NCBI) 56260
Atlas_Id 61284
Location 8q13.1  [Link to chromosome band 8q13]
Location_base_pair Starts at 66667552 and ends at 66681142 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
C8orf44 (8q13.1) / RAD17 (5q13.2)C8orf44 (8q13.1) / SGK3 (8q13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C8orf44   25646
Cards
Entrez_Gene (NCBI)C8orf44  56260  chromosome 8 open reading frame 44
Aliases
GeneCards (Weizmann)C8orf44
Ensembl hg19 (Hinxton)ENSG00000213865 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000213865 [Gene_View]  chr8:66667552-66681142 [Contig_View]  C8orf44 [Vega]
ICGC DataPortalENSG00000213865
TCGA cBioPortalC8orf44
AceView (NCBI)C8orf44
Genatlas (Paris)C8orf44
WikiGenes56260
SOURCE (Princeton)C8orf44
Genetics Home Reference (NIH)C8orf44
Genomic and cartography
GoldenPath hg38 (UCSC)C8orf44  -     chr8:66667552-66681142 +  8q13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C8orf44  -     8q13.1   [Description]    (hg19-Feb_2009)
EnsemblC8orf44 - 8q13.1 [CytoView hg19]  C8orf44 - 8q13.1 [CytoView hg38]
Mapping of homologs : NCBIC8orf44 [Mapview hg19]  C8orf44 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA551208 AK002129 BC014448 DA341401
RefSeq transcript (Entrez)NM_019607
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C8orf44
Cluster EST : UnigeneHs.661238 [ NCBI ]
CGAP (NCI)Hs.661238
Alternative Splicing GalleryENSG00000213865
Gene ExpressionC8orf44 [ NCBI-GEO ]   C8orf44 [ EBI - ARRAY_EXPRESS ]   C8orf44 [ SEEK ]   C8orf44 [ MEM ]
Gene Expression Viewer (FireBrowse)C8orf44 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56260
GTEX Portal (Tissue expression)C8orf44
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96CB5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96CB5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96CB5
Splice isoforms : SwissVarQ96CB5
PhosPhoSitePlusQ96CB5
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C8orf44
DMDM Disease mutations56260
Blocks (Seattle)C8orf44
SuperfamilyQ96CB5
Human Protein AtlasENSG00000213865
Peptide AtlasQ96CB5
HPRD07744
IPIIPI00152994   IPI00795782   
Protein Interaction databases
DIP (DOE-UCLA)Q96CB5
IntAct (EBI)Q96CB5
FunCoupENSG00000213865
BioGRIDC8orf44
STRING (EMBL)C8orf44
ZODIACC8orf44
Ontologies - Pathways
QuickGOQ96CB5
Ontology : AmiGOnucleoplasm  
Ontology : EGO-EBInucleoplasm  
NDEx NetworkC8orf44
Atlas of Cancer Signalling NetworkC8orf44
Wikipedia pathwaysC8orf44
Orthology - Evolution
OrthoDB56260
GeneTree (enSembl)ENSG00000213865
Phylogenetic Trees/Animal Genes : TreeFamC8orf44
HOVERGENQ96CB5
HOGENOMQ96CB5
Homologs : HomoloGeneC8orf44
Homology/Alignments : Family Browser (UCSC)C8orf44
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC8orf44 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C8orf44
dbVarC8orf44
ClinVarC8orf44
1000_GenomesC8orf44 
Exome Variant ServerC8orf44
ExAC (Exome Aggregation Consortium)C8orf44 (select the gene name)
Genetic variants : HAPMAP56260
Genomic Variants (DGV)C8orf44 [DGVbeta]
DECIPHERC8orf44 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC8orf44 
Mutations
ICGC Data PortalC8orf44 
TCGA Data PortalC8orf44 
Broad Tumor PortalC8orf44
OASIS PortalC8orf44 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC8orf44  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC8orf44
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C8orf44
DgiDB (Drug Gene Interaction Database)C8orf44
DoCM (Curated mutations)C8orf44 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C8orf44 (select a term)
intoGenC8orf44
Cancer3DC8orf44(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC8orf44
Genetic Testing Registry C8orf44
NextProtQ96CB5 [Medical]
TSGene56260
GENETestsC8orf44
Target ValidationC8orf44
Huge Navigator C8orf44 [HugePedia]
snp3D : Map Gene to Disease56260
BioCentury BCIQC8orf44
ClinGenC8orf44
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56260
Chemical/Pharm GKB GenePA142672363
Clinical trialC8orf44
Miscellaneous
canSAR (ICR)C8orf44 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC8orf44
EVEXC8orf44
GoPubMedC8orf44
iHOPC8orf44
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:03:34 CEST 2017

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