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C8orf46 (chromosome 8 open reading frame 46)

Identity

Alias_symbol (synonym)MGC33510
Other alias-
HGNC (Hugo) C8orf46
LocusID (NCBI) 254778
Atlas_Id 54183
Location 8q13.1  [Link to chromosome band 8q13]
Location_base_pair Starts at 67405491 and ends at 67430759 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
GPATCH8 (17q21.31) / C8orf46 (8q13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C8orf46   28498
Cards
Entrez_Gene (NCBI)C8orf46  254778  chromosome 8 open reading frame 46
Aliases
GeneCards (Weizmann)C8orf46
Ensembl hg19 (Hinxton)ENSG00000169085 [Gene_View]  chr8:67405491-67430759 [Contig_View]  C8orf46 [Vega]
Ensembl hg38 (Hinxton)ENSG00000169085 [Gene_View]  chr8:67405491-67430759 [Contig_View]  C8orf46 [Vega]
ICGC DataPortalENSG00000169085
TCGA cBioPortalC8orf46
AceView (NCBI)C8orf46
Genatlas (Paris)C8orf46
WikiGenes254778
SOURCE (Princeton)C8orf46
Genetics Home Reference (NIH)C8orf46
Genomic and cartography
GoldenPath hg19 (UCSC)C8orf46  -     chr8:67405491-67430759 +  8q13.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C8orf46  -     8q13.1   [Description]    (hg38-Dec_2013)
EnsemblC8orf46 - 8q13.1 [CytoView hg19]  C8orf46 - 8q13.1 [CytoView hg38]
Mapping of homologs : NCBIC8orf46 [Mapview hg19]  C8orf46 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK055047 AK096336 AK294261 AK308800 AK315486
RefSeq transcript (Entrez)NM_152765
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_008183 NW_004929339
Consensus coding sequences : CCDS (NCBI)C8orf46
Cluster EST : UnigeneHs.268869 [ NCBI ]
CGAP (NCI)Hs.268869
Alternative Splicing GalleryENSG00000169085
Gene ExpressionC8orf46 [ NCBI-GEO ]   C8orf46 [ EBI - ARRAY_EXPRESS ]   C8orf46 [ SEEK ]   C8orf46 [ MEM ]
Gene Expression Viewer (FireBrowse)C8orf46 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)254778
GTEX Portal (Tissue expression)C8orf46
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TAG6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TAG6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TAG6
Splice isoforms : SwissVarQ8TAG6
PhosPhoSitePlusQ8TAG6
Domains : Interpro (EBI)DUF4648   
Domain families : Pfam (Sanger)DUF4648 (PF15505)   
Domain families : Pfam (NCBI)pfam15505   
Conserved Domain (NCBI)C8orf46
DMDM Disease mutations254778
Blocks (Seattle)C8orf46
SuperfamilyQ8TAG6
Human Protein AtlasENSG00000169085
Peptide AtlasQ8TAG6
HPRD14565
IPIIPI00152055   IPI00908470   IPI00924452   IPI00980104   IPI01012029   IPI00976941   
Protein Interaction databases
DIP (DOE-UCLA)Q8TAG6
IntAct (EBI)Q8TAG6
FunCoupENSG00000169085
BioGRIDC8orf46
STRING (EMBL)C8orf46
ZODIACC8orf46
Ontologies - Pathways
QuickGOQ8TAG6
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC8orf46
Atlas of Cancer Signalling NetworkC8orf46
Wikipedia pathwaysC8orf46
Orthology - Evolution
OrthoDB254778
GeneTree (enSembl)ENSG00000169085
Phylogenetic Trees/Animal Genes : TreeFamC8orf46
HOVERGENQ8TAG6
HOGENOMQ8TAG6
Homologs : HomoloGeneC8orf46
Homology/Alignments : Family Browser (UCSC)C8orf46
Gene fusions - Rearrangements
Fusion : MitelmanGPATCH8/C8orf46 [17q21.31/8q13.1]  [t(8;17)(q13;q21)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC8orf46 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C8orf46
dbVarC8orf46
ClinVarC8orf46
1000_GenomesC8orf46 
Exome Variant ServerC8orf46
ExAC (Exome Aggregation Consortium)C8orf46 (select the gene name)
Genetic variants : HAPMAP254778
Genomic Variants (DGV)C8orf46 [DGVbeta]
DECIPHER (Syndromes)8:67405491-67430759  ENSG00000169085
CONAN: Copy Number AnalysisC8orf46 
Mutations
ICGC Data PortalC8orf46 
TCGA Data PortalC8orf46 
Broad Tumor PortalC8orf46
OASIS PortalC8orf46 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC8orf46  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC8orf46
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C8orf46
DgiDB (Drug Gene Interaction Database)C8orf46
DoCM (Curated mutations)C8orf46 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C8orf46 (select a term)
intoGenC8orf46
Cancer3DC8orf46(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC8orf46
Genetic Testing Registry C8orf46
NextProtQ8TAG6 [Medical]
TSGene254778
GENETestsC8orf46
Huge Navigator C8orf46 [HugePedia]
snp3D : Map Gene to Disease254778
BioCentury BCIQC8orf46
ClinGenC8orf46
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD254778
Chemical/Pharm GKB GenePA142672365
Clinical trialC8orf46
Miscellaneous
canSAR (ICR)C8orf46 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC8orf46
EVEXC8orf46
GoPubMedC8orf46
iHOPC8orf46
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:58:21 CET 2017

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