Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

C8orf48 (chromosome 8 open reading frame 48)

Identity

Alias (NCBI)-
HGNC (Hugo) C8orf48
HGNC Alias symbFLJ25402
LocusID (NCBI) 157773
Atlas_Id 61286
Location 8p22  [Link to chromosome band 8p22]
Location_base_pair Starts at 13566869 and ends at 13568288 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)C8orf48   26345
Cards
Entrez_Gene (NCBI)C8orf48    chromosome 8 open reading frame 48
Aliases
GeneCards (Weizmann)C8orf48
Ensembl hg19 (Hinxton)ENSG00000164743 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164743 [Gene_View]  ENSG00000164743 [Sequence]  chr8:13566869-13568288 [Contig_View]  C8orf48 [Vega]
ICGC DataPortalENSG00000164743
TCGA cBioPortalC8orf48
AceView (NCBI)C8orf48
Genatlas (Paris)C8orf48
SOURCE (Princeton)C8orf48
Genetics Home Reference (NIH)C8orf48
Genomic and cartography
GoldenPath hg38 (UCSC)C8orf48  -     chr8:13566869-13568288 +  8p22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C8orf48  -     8p22   [Description]    (hg19-Feb_2009)
GoldenPathC8orf48 - 8p22 [CytoView hg19]  C8orf48 - 8p22 [CytoView hg38]
ImmunoBaseENSG00000164743
Genome Data Viewer NCBIC8orf48 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AF394908 AK058131 AK058156 BC031245 CB306127
RefSeq transcript (Entrez)NM_001007090
Consensus coding sequences : CCDS (NCBI)C8orf48
Gene ExpressionC8orf48 [ NCBI-GEO ]   C8orf48 [ EBI - ARRAY_EXPRESS ]   C8orf48 [ SEEK ]   C8orf48 [ MEM ]
Gene Expression Viewer (FireBrowse)C8orf48 [ Firebrowse - Broad ]
GenevisibleExpression of C8orf48 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)157773
GTEX Portal (Tissue expression)C8orf48
Human Protein AtlasENSG00000164743-C8orf48 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96LL4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96LL4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96LL4
PhosPhoSitePlusQ96LL4
Domains : Interpro (EBI)DUF4606   
Domain families : Pfam (Sanger)DUF4606 (PF15379)   
Domain families : Pfam (NCBI)pfam15379   
Conserved Domain (NCBI)C8orf48
SuperfamilyQ96LL4
AlphaFold pdb e-kbQ96LL4   
Human Protein Atlas [tissue]ENSG00000164743-C8orf48 [tissue]
HPRD16922
Protein Interaction databases
DIP (DOE-UCLA)Q96LL4
IntAct (EBI)Q96LL4
BioGRIDC8orf48
STRING (EMBL)C8orf48
ZODIACC8orf48
Ontologies - Pathways
QuickGOQ96LL4
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkC8orf48
Atlas of Cancer Signalling NetworkC8orf48
Wikipedia pathwaysC8orf48
Orthology - Evolution
OrthoDB157773
GeneTree (enSembl)ENSG00000164743
Phylogenetic Trees/Animal Genes : TreeFamC8orf48
Homologs : HomoloGeneC8orf48
Homology/Alignments : Family Browser (UCSC)C8orf48
Gene fusions - Rearrangements
Fusion : QuiverC8orf48
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC8orf48 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C8orf48
dbVarC8orf48
ClinVarC8orf48
MonarchC8orf48
1000_GenomesC8orf48 
Exome Variant ServerC8orf48
GNOMAD BrowserENSG00000164743
Varsome BrowserC8orf48
ACMGC8orf48 variants
VarityQ96LL4
Genomic Variants (DGV)C8orf48 [DGVbeta]
DECIPHERC8orf48 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC8orf48 
Mutations
ICGC Data PortalC8orf48 
TCGA Data PortalC8orf48 
Broad Tumor PortalC8orf48
OASIS PortalC8orf48 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC8orf48  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DC8orf48
Mutations and Diseases : HGMDC8orf48
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaC8orf48
DgiDB (Drug Gene Interaction Database)C8orf48
DoCM (Curated mutations)C8orf48
CIViC (Clinical Interpretations of Variants in Cancer)C8orf48
Cancer3DC8orf48
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETC8orf48
MedgenC8orf48
Genetic Testing Registry C8orf48
NextProtQ96LL4 [Medical]
GENETestsC8orf48
Target ValidationC8orf48
Huge Navigator C8orf48 [HugePedia]
ClinGenC8orf48
Clinical trials, drugs, therapy
MyCancerGenomeC8orf48
Protein Interactions : CTDC8orf48
Pharm GKB GenePA142672367
PharosQ96LL4
Clinical trialC8orf48
Miscellaneous
canSAR (ICR)C8orf48
HarmonizomeC8orf48
DataMed IndexC8orf48
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXC8orf48
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:44:30 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.