Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C8orf49 (chromosome 8 open reading frame 49)

Identity

Alias_symbol (synonym)FLJ30972
G4DM
Other alias
HGNC (Hugo) C8orf49
LocusID (NCBI) 606553
Atlas_Id 61287
Location 8p23.1  [Link to chromosome band 8p23]
Location_base_pair Starts at 11761256 and ends at 11763223 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C8orf49   32200
Cards
Entrez_Gene (NCBI)C8orf49  606553  chromosome 8 open reading frame 49
AliasesG4DM
GeneCards (Weizmann)C8orf49
Ensembl hg19 (Hinxton)ENSG00000255394 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000255394 [Gene_View]  chr8:11761256-11763223 [Contig_View]  C8orf49 [Vega]
ICGC DataPortalENSG00000255394
TCGA cBioPortalC8orf49
AceView (NCBI)C8orf49
Genatlas (Paris)C8orf49
WikiGenes606553
SOURCE (Princeton)C8orf49
Genetics Home Reference (NIH)C8orf49
Genomic and cartography
GoldenPath hg38 (UCSC)C8orf49  -     chr8:11761256-11763223 +  8p23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C8orf49  -     8p23.1   [Description]    (hg19-Feb_2009)
EnsemblC8orf49 - 8p23.1 [CytoView hg19]  C8orf49 - 8p23.1 [CytoView hg38]
Mapping of homologs : NCBIC8orf49 [Mapview hg19]  C8orf49 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK055534 BC132945 BC136882
RefSeq transcript (Entrez)NM_001031839
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C8orf49
Cluster EST : UnigeneHs.545529 [ NCBI ]
CGAP (NCI)Hs.545529
Alternative Splicing GalleryENSG00000255394
Gene ExpressionC8orf49 [ NCBI-GEO ]   C8orf49 [ EBI - ARRAY_EXPRESS ]   C8orf49 [ SEEK ]   C8orf49 [ MEM ]
Gene Expression Viewer (FireBrowse)C8orf49 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)606553
GTEX Portal (Tissue expression)C8orf49
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96NF6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96NF6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96NF6
Splice isoforms : SwissVarQ96NF6
PhosPhoSitePlusQ96NF6
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C8orf49
DMDM Disease mutations606553
Blocks (Seattle)C8orf49
SuperfamilyQ96NF6
Human Protein AtlasENSG00000255394
Peptide AtlasQ96NF6
IPIIPI00289282   
Protein Interaction databases
DIP (DOE-UCLA)Q96NF6
IntAct (EBI)Q96NF6
FunCoupENSG00000255394
BioGRIDC8orf49
STRING (EMBL)C8orf49
ZODIACC8orf49
Ontologies - Pathways
QuickGOQ96NF6
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkC8orf49
Atlas of Cancer Signalling NetworkC8orf49
Wikipedia pathwaysC8orf49
Orthology - Evolution
OrthoDB606553
GeneTree (enSembl)ENSG00000255394
Phylogenetic Trees/Animal Genes : TreeFamC8orf49
HOVERGENQ96NF6
HOGENOMQ96NF6
Homologs : HomoloGeneC8orf49
Homology/Alignments : Family Browser (UCSC)C8orf49
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC8orf49 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C8orf49
dbVarC8orf49
ClinVarC8orf49
1000_GenomesC8orf49 
Exome Variant ServerC8orf49
ExAC (Exome Aggregation Consortium)C8orf49 (select the gene name)
Genetic variants : HAPMAP606553
Genomic Variants (DGV)C8orf49 [DGVbeta]
DECIPHERC8orf49 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC8orf49 
Mutations
ICGC Data PortalC8orf49 
TCGA Data PortalC8orf49 
Broad Tumor PortalC8orf49
OASIS PortalC8orf49 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC8orf49  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC8orf49
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C8orf49
DgiDB (Drug Gene Interaction Database)C8orf49
DoCM (Curated mutations)C8orf49 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C8orf49 (select a term)
intoGenC8orf49
Cancer3DC8orf49(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC8orf49
Genetic Testing Registry C8orf49
NextProtQ96NF6 [Medical]
TSGene606553
GENETestsC8orf49
Target ValidationC8orf49
Huge Navigator C8orf49 [HugePedia]
snp3D : Map Gene to Disease606553
BioCentury BCIQC8orf49
ClinGenC8orf49
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD606553
Chemical/Pharm GKB GenePA142672368
Clinical trialC8orf49
Miscellaneous
canSAR (ICR)C8orf49 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC8orf49
EVEXC8orf49
GoPubMedC8orf49
iHOPC8orf49
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:03:34 CEST 2017

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