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C8orf58 (chromosome 8 open reading frame 58)

Identity

Alias_symbol (synonym)FLJ34715
Other alias-
HGNC (Hugo) C8orf58
LocusID (NCBI) 541565
Atlas_Id 61288
Location 8p21.3  [Link to chromosome band 8p21]
Location_base_pair Starts at 22599601 and ends at 22604149 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MYO7B (2q14.3) / C8orf58 (8p21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C8orf58   32233
Cards
Entrez_Gene (NCBI)C8orf58  541565  chromosome 8 open reading frame 58
Aliases
GeneCards (Weizmann)C8orf58
Ensembl hg19 (Hinxton)ENSG00000241852 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000241852 [Gene_View]  chr8:22599601-22604149 [Contig_View]  C8orf58 [Vega]
ICGC DataPortalENSG00000241852
TCGA cBioPortalC8orf58
AceView (NCBI)C8orf58
Genatlas (Paris)C8orf58
WikiGenes541565
SOURCE (Princeton)C8orf58
Genetics Home Reference (NIH)C8orf58
Genomic and cartography
GoldenPath hg38 (UCSC)C8orf58  -     chr8:22599601-22604149 +  8p21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C8orf58  -     8p21.3   [Description]    (hg19-Feb_2009)
EnsemblC8orf58 - 8p21.3 [CytoView hg19]  C8orf58 - 8p21.3 [CytoView hg38]
Mapping of homologs : NCBIC8orf58 [Mapview hg19]  C8orf58 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI380311 AK092034 AK295405 BC012750 BI910955
RefSeq transcript (Entrez)NM_001013842 NM_001198827 NM_173686
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C8orf58
Cluster EST : UnigeneHs.743508 [ NCBI ]
CGAP (NCI)Hs.743508
Alternative Splicing GalleryENSG00000241852
Gene ExpressionC8orf58 [ NCBI-GEO ]   C8orf58 [ EBI - ARRAY_EXPRESS ]   C8orf58 [ SEEK ]   C8orf58 [ MEM ]
Gene Expression Viewer (FireBrowse)C8orf58 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)541565
GTEX Portal (Tissue expression)C8orf58
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NAV2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NAV2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NAV2
Splice isoforms : SwissVarQ8NAV2
PhosPhoSitePlusQ8NAV2
Domains : Interpro (EBI)DUF4657   
Domain families : Pfam (Sanger)DUF4657 (PF15552)   
Domain families : Pfam (NCBI)pfam15552   
Conserved Domain (NCBI)C8orf58
DMDM Disease mutations541565
Blocks (Seattle)C8orf58
SuperfamilyQ8NAV2
Human Protein AtlasENSG00000241852
Peptide AtlasQ8NAV2
HPRD18675
IPIIPI00168133   IPI00795070   IPI00748515   IPI00982633   IPI00974200   IPI00980857   
Protein Interaction databases
DIP (DOE-UCLA)Q8NAV2
IntAct (EBI)Q8NAV2
FunCoupENSG00000241852
BioGRIDC8orf58
STRING (EMBL)C8orf58
ZODIACC8orf58
Ontologies - Pathways
QuickGOQ8NAV2
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC8orf58
Atlas of Cancer Signalling NetworkC8orf58
Wikipedia pathwaysC8orf58
Orthology - Evolution
OrthoDB541565
GeneTree (enSembl)ENSG00000241852
Phylogenetic Trees/Animal Genes : TreeFamC8orf58
HOVERGENQ8NAV2
HOGENOMQ8NAV2
Homologs : HomoloGeneC8orf58
Homology/Alignments : Family Browser (UCSC)C8orf58
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC8orf58 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C8orf58
dbVarC8orf58
ClinVarC8orf58
1000_GenomesC8orf58 
Exome Variant ServerC8orf58
ExAC (Exome Aggregation Consortium)C8orf58 (select the gene name)
Genetic variants : HAPMAP541565
Genomic Variants (DGV)C8orf58 [DGVbeta]
DECIPHERC8orf58 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC8orf58 
Mutations
ICGC Data PortalC8orf58 
TCGA Data PortalC8orf58 
Broad Tumor PortalC8orf58
OASIS PortalC8orf58 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC8orf58  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC8orf58
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C8orf58
DgiDB (Drug Gene Interaction Database)C8orf58
DoCM (Curated mutations)C8orf58 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C8orf58 (select a term)
intoGenC8orf58
Cancer3DC8orf58(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC8orf58
Genetic Testing Registry C8orf58
NextProtQ8NAV2 [Medical]
TSGene541565
GENETestsC8orf58
Target ValidationC8orf58
Huge Navigator C8orf58 [HugePedia]
snp3D : Map Gene to Disease541565
BioCentury BCIQC8orf58
ClinGenC8orf58
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD541565
Chemical/Pharm GKB GenePA142672321
Clinical trialC8orf58
Miscellaneous
canSAR (ICR)C8orf58 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC8orf58
EVEXC8orf58
GoPubMedC8orf58
iHOPC8orf58
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:03:34 CEST 2017

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