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C8orf59 (chromosome 8 open reading frame 59)

Identity

Other alias-
HGNC (Hugo) C8orf59
LocusID (NCBI) 401466
Atlas_Id 61289
Location 8q21.2  [Link to chromosome band 8q21]
Location_base_pair Starts at 86126288 and ends at 86132651 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C8orf59   32235
Cards
Entrez_Gene (NCBI)C8orf59  401466  chromosome 8 open reading frame 59
Aliases
GeneCards (Weizmann)C8orf59
Ensembl hg19 (Hinxton)ENSG00000176731 [Gene_View]  chr8:86126288-86132651 [Contig_View]  C8orf59 [Vega]
Ensembl hg38 (Hinxton)ENSG00000176731 [Gene_View]  chr8:86126288-86132651 [Contig_View]  C8orf59 [Vega]
ICGC DataPortalENSG00000176731
TCGA cBioPortalC8orf59
AceView (NCBI)C8orf59
Genatlas (Paris)C8orf59
WikiGenes401466
SOURCE (Princeton)C8orf59
Genetics Home Reference (NIH)C8orf59
Genomic and cartography
GoldenPath hg19 (UCSC)C8orf59  -     chr8:86126288-86132651 -  8q21.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C8orf59  -     8q21.2   [Description]    (hg38-Dec_2013)
EnsemblC8orf59 - 8q21.2 [CytoView hg19]  C8orf59 - 8q21.2 [CytoView hg38]
Mapping of homologs : NCBIC8orf59 [Mapview hg19]  C8orf59 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK000414 BC032347 BC055092 BC062221 BC146983
RefSeq transcript (Entrez)NM_001099670 NM_001099671 NM_001099672 NM_001099673 NM_001293320
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_008183 NW_004929339
Consensus coding sequences : CCDS (NCBI)C8orf59
Cluster EST : UnigeneHs.443072 [ NCBI ]
CGAP (NCI)Hs.443072
Alternative Splicing GalleryENSG00000176731
Gene ExpressionC8orf59 [ NCBI-GEO ]   C8orf59 [ EBI - ARRAY_EXPRESS ]   C8orf59 [ SEEK ]   C8orf59 [ MEM ]
Gene Expression Viewer (FireBrowse)C8orf59 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)401466
GTEX Portal (Tissue expression)C8orf59
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N0T1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N0T1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N0T1
Splice isoforms : SwissVarQ8N0T1
PhosPhoSitePlusQ8N0T1
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C8orf59
DMDM Disease mutations401466
Blocks (Seattle)C8orf59
SuperfamilyQ8N0T1
Human Protein AtlasENSG00000176731
Peptide AtlasQ8N0T1
IPIIPI00166055   IPI00748882   IPI00790838   IPI00982566   
Protein Interaction databases
DIP (DOE-UCLA)Q8N0T1
IntAct (EBI)Q8N0T1
FunCoupENSG00000176731
BioGRIDC8orf59
STRING (EMBL)C8orf59
ZODIACC8orf59
Ontologies - Pathways
QuickGOQ8N0T1
Ontology : AmiGOpositive regulation of defense response to virus by host  activation of mitophagy in response to mitochondrial depolarization  
Ontology : EGO-EBIpositive regulation of defense response to virus by host  activation of mitophagy in response to mitochondrial depolarization  
NDEx NetworkC8orf59
Atlas of Cancer Signalling NetworkC8orf59
Wikipedia pathwaysC8orf59
Orthology - Evolution
OrthoDB401466
GeneTree (enSembl)ENSG00000176731
Phylogenetic Trees/Animal Genes : TreeFamC8orf59
HOVERGENQ8N0T1
HOGENOMQ8N0T1
Homologs : HomoloGeneC8orf59
Homology/Alignments : Family Browser (UCSC)C8orf59
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC8orf59 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C8orf59
dbVarC8orf59
ClinVarC8orf59
1000_GenomesC8orf59 
Exome Variant ServerC8orf59
ExAC (Exome Aggregation Consortium)C8orf59 (select the gene name)
Genetic variants : HAPMAP401466
Genomic Variants (DGV)C8orf59 [DGVbeta]
DECIPHER (Syndromes)8:86126288-86132651  ENSG00000176731
CONAN: Copy Number AnalysisC8orf59 
Mutations
ICGC Data PortalC8orf59 
TCGA Data PortalC8orf59 
Broad Tumor PortalC8orf59
OASIS PortalC8orf59 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC8orf59  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC8orf59
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C8orf59
DgiDB (Drug Gene Interaction Database)C8orf59
DoCM (Curated mutations)C8orf59 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C8orf59 (select a term)
intoGenC8orf59
Cancer3DC8orf59(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC8orf59
Genetic Testing Registry C8orf59
NextProtQ8N0T1 [Medical]
TSGene401466
GENETestsC8orf59
Huge Navigator C8orf59 [HugePedia]
snp3D : Map Gene to Disease401466
BioCentury BCIQC8orf59
ClinGenC8orf59
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD401466
Chemical/Pharm GKB GenePA142672322
Clinical trialC8orf59
Miscellaneous
canSAR (ICR)C8orf59 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC8orf59
EVEXC8orf59
GoPubMedC8orf59
iHOPC8orf59
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:57:41 CET 2017

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