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C8orf74 (chromosome 8 open reading frame 74)

Identity

Other alias-
HGNC (Hugo) C8orf74
LocusID (NCBI) 203076
Atlas_Id 61291
Location 8p23.1  [Link to chromosome band 8p23]
Location_base_pair Starts at 10672637 and ends at 10700593 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
HACE1 (6q16.3) / C8orf74 (8p23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C8orf74   32296
Cards
Entrez_Gene (NCBI)C8orf74  203076  chromosome 8 open reading frame 74
Aliases
GeneCards (Weizmann)C8orf74
Ensembl hg19 (Hinxton)ENSG00000171060 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171060 [Gene_View]  chr8:10672637-10700593 [Contig_View]  C8orf74 [Vega]
ICGC DataPortalENSG00000171060
TCGA cBioPortalC8orf74
AceView (NCBI)C8orf74
Genatlas (Paris)C8orf74
WikiGenes203076
SOURCE (Princeton)C8orf74
Genetics Home Reference (NIH)C8orf74
Genomic and cartography
GoldenPath hg38 (UCSC)C8orf74  -     chr8:10672637-10700593 +  8p23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C8orf74  -     8p23.1   [Description]    (hg19-Feb_2009)
EnsemblC8orf74 - 8p23.1 [CytoView hg19]  C8orf74 - 8p23.1 [CytoView hg38]
Mapping of homologs : NCBIC8orf74 [Mapview hg19]  C8orf74 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK131443 BC038534 BC065837 BC132852 BC132854
RefSeq transcript (Entrez)NM_001040032
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C8orf74
Cluster EST : UnigeneHs.371776 [ NCBI ]
CGAP (NCI)Hs.371776
Alternative Splicing GalleryENSG00000171060
Gene ExpressionC8orf74 [ NCBI-GEO ]   C8orf74 [ EBI - ARRAY_EXPRESS ]   C8orf74 [ SEEK ]   C8orf74 [ MEM ]
Gene Expression Viewer (FireBrowse)C8orf74 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)203076
GTEX Portal (Tissue expression)C8orf74
Human Protein AtlasENSG00000171060-C8orf74 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6P047   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6P047  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6P047
Splice isoforms : SwissVarQ6P047
PhosPhoSitePlusQ6P047
Domains : Interpro (EBI)CLAMP   
Domain families : Pfam (Sanger)CLAMP (PF14769)   
Domain families : Pfam (NCBI)pfam14769   
Conserved Domain (NCBI)C8orf74
DMDM Disease mutations203076
Blocks (Seattle)C8orf74
SuperfamilyQ6P047
Human Protein Atlas [tissue]ENSG00000171060-C8orf74 [tissue]
Peptide AtlasQ6P047
IPIIPI00741453   IPI00794236   IPI00977924   
Protein Interaction databases
DIP (DOE-UCLA)Q6P047
IntAct (EBI)Q6P047
FunCoupENSG00000171060
BioGRIDC8orf74
STRING (EMBL)C8orf74
ZODIACC8orf74
Ontologies - Pathways
QuickGOQ6P047
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkC8orf74
Atlas of Cancer Signalling NetworkC8orf74
Wikipedia pathwaysC8orf74
Orthology - Evolution
OrthoDB203076
GeneTree (enSembl)ENSG00000171060
Phylogenetic Trees/Animal Genes : TreeFamC8orf74
HOVERGENQ6P047
HOGENOMQ6P047
Homologs : HomoloGeneC8orf74
Homology/Alignments : Family Browser (UCSC)C8orf74
Gene fusions - Rearrangements
Fusion: Tumor Portal C8orf74
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC8orf74 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C8orf74
dbVarC8orf74
ClinVarC8orf74
1000_GenomesC8orf74 
Exome Variant ServerC8orf74
ExAC (Exome Aggregation Consortium)ENSG00000171060
GNOMAD BrowserENSG00000171060
Genetic variants : HAPMAP203076
Genomic Variants (DGV)C8orf74 [DGVbeta]
DECIPHERC8orf74 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC8orf74 
Mutations
ICGC Data PortalC8orf74 
TCGA Data PortalC8orf74 
Broad Tumor PortalC8orf74
OASIS PortalC8orf74 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC8orf74  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC8orf74
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C8orf74
DgiDB (Drug Gene Interaction Database)C8orf74
DoCM (Curated mutations)C8orf74 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C8orf74 (select a term)
intoGenC8orf74
Cancer3DC8orf74(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC8orf74
Genetic Testing Registry C8orf74
NextProtQ6P047 [Medical]
TSGene203076
GENETestsC8orf74
Target ValidationC8orf74
Huge Navigator C8orf74 [HugePedia]
snp3D : Map Gene to Disease203076
BioCentury BCIQC8orf74
ClinGenC8orf74
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD203076
Chemical/Pharm GKB GenePA142672337
Clinical trialC8orf74
Miscellaneous
canSAR (ICR)C8orf74 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC8orf74
EVEXC8orf74
GoPubMedC8orf74
iHOPC8orf74
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:40:53 CET 2017

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