Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C8orf82 (chromosome 8 open reading frame 82)

Identity

Alias_symbol (synonym)MGC70857
Other alias-
HGNC (Hugo) C8orf82
LocusID (NCBI) 414919
Atlas_Id 61293
Location 8q24.3  [Link to chromosome band 8q24]
Location_base_pair Starts at 144526219 and ends at 144529074 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
C8orf82 (8q24.3) / OR13C5 (9q31.1)C8orf82 (8q24.3) / OR13C9 (9q31.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C8orf82   33826
Cards
Entrez_Gene (NCBI)C8orf82  414919  chromosome 8 open reading frame 82
Aliases
GeneCards (Weizmann)C8orf82
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr8:144526219-144529074 [Contig_View]  C8orf82 [Vega]
TCGA cBioPortalC8orf82
AceView (NCBI)C8orf82
Genatlas (Paris)C8orf82
WikiGenes414919
SOURCE (Princeton)C8orf82
Genetics Home Reference (NIH)C8orf82
Genomic and cartography
GoldenPath hg38 (UCSC)C8orf82  -     chr8:144526219-144529074 -  8q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C8orf82  -     8q24.3   [Description]    (hg19-Feb_2009)
EnsemblC8orf82 - 8q24.3 [CytoView hg19]  C8orf82 - 8q24.3 [CytoView hg38]
Mapping of homologs : NCBIC8orf82 [Mapview hg19]  C8orf82 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC064373 BC064829 BC073936
RefSeq transcript (Entrez)NM_001001795
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C8orf82
Cluster EST : UnigeneHs.105685 [ NCBI ]
CGAP (NCI)Hs.105685
Gene ExpressionC8orf82 [ NCBI-GEO ]   C8orf82 [ EBI - ARRAY_EXPRESS ]   C8orf82 [ SEEK ]   C8orf82 [ MEM ]
Gene Expression Viewer (FireBrowse)C8orf82 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)414919
GTEX Portal (Tissue expression)C8orf82
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6P1X6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6P1X6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6P1X6
Splice isoforms : SwissVarQ6P1X6
PhosPhoSitePlusQ6P1X6
Domains : Interpro (EBI)DUF4505   
Domain families : Pfam (Sanger)DUF4505 (PF14956)   
Domain families : Pfam (NCBI)pfam14956   
Conserved Domain (NCBI)C8orf82
DMDM Disease mutations414919
Blocks (Seattle)C8orf82
SuperfamilyQ6P1X6
Peptide AtlasQ6P1X6
HPRD17567
IPIIPI00166638   IPI00430781   IPI00976591   IPI00977557   IPI00977422   
Protein Interaction databases
DIP (DOE-UCLA)Q6P1X6
IntAct (EBI)Q6P1X6
BioGRIDC8orf82
STRING (EMBL)C8orf82
ZODIACC8orf82
Ontologies - Pathways
QuickGOQ6P1X6
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC8orf82
Atlas of Cancer Signalling NetworkC8orf82
Wikipedia pathwaysC8orf82
Orthology - Evolution
OrthoDB414919
Phylogenetic Trees/Animal Genes : TreeFamC8orf82
HOVERGENQ6P1X6
HOGENOMQ6P1X6
Homologs : HomoloGeneC8orf82
Homology/Alignments : Family Browser (UCSC)C8orf82
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC8orf82 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C8orf82
dbVarC8orf82
ClinVarC8orf82
1000_GenomesC8orf82 
Exome Variant ServerC8orf82
ExAC (Exome Aggregation Consortium)C8orf82 (select the gene name)
Genetic variants : HAPMAP414919
Genomic Variants (DGV)C8orf82 [DGVbeta]
DECIPHERC8orf82 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC8orf82 
Mutations
ICGC Data PortalC8orf82 
TCGA Data PortalC8orf82 
Broad Tumor PortalC8orf82
OASIS PortalC8orf82 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC8orf82  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC8orf82
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C8orf82
DgiDB (Drug Gene Interaction Database)C8orf82
DoCM (Curated mutations)C8orf82 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C8orf82 (select a term)
intoGenC8orf82
Cancer3DC8orf82(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC8orf82
Genetic Testing Registry C8orf82
NextProtQ6P1X6 [Medical]
TSGene414919
GENETestsC8orf82
Target ValidationC8orf82
Huge Navigator C8orf82 [HugePedia]
snp3D : Map Gene to Disease414919
BioCentury BCIQC8orf82
ClinGenC8orf82
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD414919
Chemical/Pharm GKB GenePA162380827
Clinical trialC8orf82
Miscellaneous
canSAR (ICR)C8orf82 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC8orf82
EVEXC8orf82
GoPubMedC8orf82
iHOPC8orf82
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:41:38 CEST 2017

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