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C8orf86 (chromosome 8 open reading frame 86)

Identity

Alias_symbol (synonym)FLJ43582
Other alias-
HGNC (Hugo) C8orf86
LocusID (NCBI) 389649
Atlas_Id 61294
Location 8p11.22  [Link to chromosome band 8p11]
Location_base_pair Starts at 38510834 and ends at 38528662 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ASH2L (8p11.23) / C8orf86 (8p11.22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C8orf86   33774
Cards
Entrez_Gene (NCBI)C8orf86  389649  chromosome 8 open reading frame 86
Aliases
GeneCards (Weizmann)C8orf86
Ensembl hg19 (Hinxton)ENSG00000196166 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196166 [Gene_View]  chr8:38510834-38528662 [Contig_View]  C8orf86 [Vega]
ICGC DataPortalENSG00000196166
TCGA cBioPortalC8orf86
AceView (NCBI)C8orf86
Genatlas (Paris)C8orf86
WikiGenes389649
SOURCE (Princeton)C8orf86
Genetics Home Reference (NIH)C8orf86
Genomic and cartography
GoldenPath hg38 (UCSC)C8orf86  -     chr8:38510834-38528662 -  8p11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C8orf86  -     8p11.22   [Description]    (hg19-Feb_2009)
EnsemblC8orf86 - 8p11.22 [CytoView hg19]  C8orf86 - 8p11.22 [CytoView hg38]
Mapping of homologs : NCBIC8orf86 [Mapview hg19]  C8orf86 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK125570 BC137511 BC137512 BC139744
RefSeq transcript (Entrez)NM_001303531 NM_207412
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C8orf86
Cluster EST : UnigeneHs.546586 [ NCBI ]
CGAP (NCI)Hs.546586
Alternative Splicing GalleryENSG00000196166
Gene ExpressionC8orf86 [ NCBI-GEO ]   C8orf86 [ EBI - ARRAY_EXPRESS ]   C8orf86 [ SEEK ]   C8orf86 [ MEM ]
Gene Expression Viewer (FireBrowse)C8orf86 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)389649
GTEX Portal (Tissue expression)C8orf86
Human Protein AtlasENSG00000196166-C8orf86 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZUL3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZUL3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZUL3
Splice isoforms : SwissVarQ6ZUL3
PhosPhoSitePlusQ6ZUL3
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C8orf86
DMDM Disease mutations389649
Blocks (Seattle)C8orf86
SuperfamilyQ6ZUL3
Human Protein Atlas [tissue]ENSG00000196166-C8orf86 [tissue]
Peptide AtlasQ6ZUL3
HPRD13474
IPIIPI00410478   IPI00845518   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZUL3
IntAct (EBI)Q6ZUL3
FunCoupENSG00000196166
BioGRIDC8orf86
STRING (EMBL)C8orf86
ZODIACC8orf86
Ontologies - Pathways
QuickGOQ6ZUL3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC8orf86
Atlas of Cancer Signalling NetworkC8orf86
Wikipedia pathwaysC8orf86
Orthology - Evolution
OrthoDB389649
GeneTree (enSembl)ENSG00000196166
Phylogenetic Trees/Animal Genes : TreeFamC8orf86
HOVERGENQ6ZUL3
HOGENOMQ6ZUL3
Homologs : HomoloGeneC8orf86
Homology/Alignments : Family Browser (UCSC)C8orf86
Gene fusions - Rearrangements
Fusion: Tumor Portal C8orf86
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC8orf86 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C8orf86
dbVarC8orf86
ClinVarC8orf86
1000_GenomesC8orf86 
Exome Variant ServerC8orf86
ExAC (Exome Aggregation Consortium)ENSG00000196166
GNOMAD BrowserENSG00000196166
Genetic variants : HAPMAP389649
Genomic Variants (DGV)C8orf86 [DGVbeta]
DECIPHERC8orf86 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC8orf86 
Mutations
ICGC Data PortalC8orf86 
TCGA Data PortalC8orf86 
Broad Tumor PortalC8orf86
OASIS PortalC8orf86 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC8orf86  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC8orf86
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C8orf86
DgiDB (Drug Gene Interaction Database)C8orf86
DoCM (Curated mutations)C8orf86 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C8orf86 (select a term)
intoGenC8orf86
Cancer3DC8orf86(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC8orf86
Genetic Testing Registry C8orf86
NextProtQ6ZUL3 [Medical]
TSGene389649
GENETestsC8orf86
Target ValidationC8orf86
Huge Navigator C8orf86 [HugePedia]
snp3D : Map Gene to Disease389649
BioCentury BCIQC8orf86
ClinGenC8orf86
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD389649
Chemical/Pharm GKB GenePA164717510
Clinical trialC8orf86
Miscellaneous
canSAR (ICR)C8orf86 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC8orf86
EVEXC8orf86
GoPubMedC8orf86
iHOPC8orf86
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:40:54 CET 2017

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