Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C8orf87 (chromosome 8 open reading frame 87)

Identity

Other alias-
HGNC (Hugo) C8orf87
LocusID (NCBI) 389676
Atlas_Id 61295
Location 8q22.1  [Link to chromosome band 8q22]
Location_base_pair Starts at 93134095 and ends at 93166850 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C8orf87   42974
Cards
Entrez_Gene (NCBI)C8orf87  389676  chromosome 8 open reading frame 87
Aliases
GeneCards (Weizmann)C8orf87
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr8:93134095-93166850 [Contig_View]  C8orf87 [Vega]
TCGA cBioPortalC8orf87
AceView (NCBI)C8orf87
Genatlas (Paris)C8orf87
WikiGenes389676
SOURCE (Princeton)C8orf87
Genetics Home Reference (NIH)C8orf87
Genomic and cartography
GoldenPath hg38 (UCSC)C8orf87  -     chr8:93134095-93166850 -  8q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C8orf87  -     8q22.1   [Description]    (hg19-Feb_2009)
EnsemblC8orf87 - 8q22.1 [CytoView hg19]  C8orf87 - 8q22.1 [CytoView hg38]
Mapping of homologs : NCBIC8orf87 [Mapview hg19]  C8orf87 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC089453
RefSeq transcript (Entrez)NM_001242668
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C8orf87
Cluster EST : UnigeneHs.386711 [ NCBI ]
CGAP (NCI)Hs.386711
Gene ExpressionC8orf87 [ NCBI-GEO ]   C8orf87 [ EBI - ARRAY_EXPRESS ]   C8orf87 [ SEEK ]   C8orf87 [ MEM ]
Gene Expression Viewer (FireBrowse)C8orf87 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)389676
GTEX Portal (Tissue expression)C8orf87
Protein : pattern, domain, 3D structure
UniProt/SwissProtE5RJ46   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtE5RJ46  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProE5RJ46
Splice isoforms : SwissVarE5RJ46
PhosPhoSitePlusE5RJ46
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C8orf87
DMDM Disease mutations389676
Blocks (Seattle)C8orf87
SuperfamilyE5RJ46
Peptide AtlasE5RJ46
IPIIPI00973815   IPI00980193   
Protein Interaction databases
DIP (DOE-UCLA)E5RJ46
IntAct (EBI)E5RJ46
BioGRIDC8orf87
STRING (EMBL)C8orf87
ZODIACC8orf87
Ontologies - Pathways
QuickGOE5RJ46
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC8orf87
Atlas of Cancer Signalling NetworkC8orf87
Wikipedia pathwaysC8orf87
Orthology - Evolution
OrthoDB389676
Phylogenetic Trees/Animal Genes : TreeFamC8orf87
HOVERGENE5RJ46
HOGENOME5RJ46
Homologs : HomoloGeneC8orf87
Homology/Alignments : Family Browser (UCSC)C8orf87
Gene fusions - Rearrangements
Tumor Fusion PortalC8orf87
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC8orf87 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C8orf87
dbVarC8orf87
ClinVarC8orf87
1000_GenomesC8orf87 
Exome Variant ServerC8orf87
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP389676
Genomic Variants (DGV)C8orf87 [DGVbeta]
DECIPHERC8orf87 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC8orf87 
Mutations
ICGC Data PortalC8orf87 
TCGA Data PortalC8orf87 
Broad Tumor PortalC8orf87
OASIS PortalC8orf87 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDC8orf87
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C8orf87
DgiDB (Drug Gene Interaction Database)C8orf87
DoCM (Curated mutations)C8orf87 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C8orf87 (select a term)
intoGenC8orf87
Cancer3DC8orf87(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETC8orf87
MedgenC8orf87
Genetic Testing Registry C8orf87
NextProtE5RJ46 [Medical]
TSGene389676
GENETestsC8orf87
Target ValidationC8orf87
Huge Navigator C8orf87 [HugePedia]
snp3D : Map Gene to Disease389676
BioCentury BCIQC8orf87
ClinGenC8orf87
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD389676
Chemical/Pharm GKB GenePA166049096
Clinical trialC8orf87
Miscellaneous
canSAR (ICR)C8orf87 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC8orf87
EVEXC8orf87
GoPubMedC8orf87
iHOPC8orf87
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:17:56 CET 2017

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