Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C8orf88 (chromosome 8 open reading frame 88)

Identity

Other alias-
HGNC (Hugo) C8orf88
LocusID (NCBI) 100127983
Atlas_Id 61296
Location 8q21.3  [Link to chromosome band 8q21]
Location_base_pair Starts at 90958478 and ends at 90985257 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C8orf88   44672
Cards
Entrez_Gene (NCBI)C8orf88  100127983  chromosome 8 open reading frame 88
Aliases
GeneCards (Weizmann)C8orf88
Ensembl hg19 (Hinxton)ENSG00000253250 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000253250 [Gene_View]  chr8:90958478-90985257 [Contig_View]  C8orf88 [Vega]
ICGC DataPortalENSG00000253250
TCGA cBioPortalC8orf88
AceView (NCBI)C8orf88
Genatlas (Paris)C8orf88
WikiGenes100127983
SOURCE (Princeton)C8orf88
Genetics Home Reference (NIH)C8orf88
Genomic and cartography
GoldenPath hg38 (UCSC)C8orf88  -     chr8:90958478-90985257 -  8q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C8orf88  -     8q21.3   [Description]    (hg19-Feb_2009)
EnsemblC8orf88 - 8q21.3 [CytoView hg19]  C8orf88 - 8q21.3 [CytoView hg38]
Mapping of homologs : NCBIC8orf88 [Mapview hg19]  C8orf88 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BI562585 BI829215 DA838443
RefSeq transcript (Entrez)NM_001190972
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C8orf88
Cluster EST : UnigeneHs.733266 [ NCBI ]
CGAP (NCI)Hs.733266
Alternative Splicing GalleryENSG00000253250
Gene ExpressionC8orf88 [ NCBI-GEO ]   C8orf88 [ EBI - ARRAY_EXPRESS ]   C8orf88 [ SEEK ]   C8orf88 [ MEM ]
Gene Expression Viewer (FireBrowse)C8orf88 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100127983
GTEX Portal (Tissue expression)C8orf88
Human Protein AtlasENSG00000253250-C8orf88 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0DMB2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0DMB2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0DMB2
Splice isoforms : SwissVarP0DMB2
PhosPhoSitePlusP0DMB2
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C8orf88
DMDM Disease mutations100127983
Blocks (Seattle)C8orf88
SuperfamilyP0DMB2
Human Protein Atlas [tissue]ENSG00000253250-C8orf88 [tissue]
Peptide AtlasP0DMB2
IPIIPI00790333   
Protein Interaction databases
DIP (DOE-UCLA)P0DMB2
IntAct (EBI)P0DMB2
FunCoupENSG00000253250
BioGRIDC8orf88
STRING (EMBL)C8orf88
ZODIACC8orf88
Ontologies - Pathways
QuickGOP0DMB2
Ontology : AmiGOcytoplasm  eukaryotic initiation factor 4E binding  negative regulation of translational initiation  
Ontology : EGO-EBIcytoplasm  eukaryotic initiation factor 4E binding  negative regulation of translational initiation  
NDEx NetworkC8orf88
Atlas of Cancer Signalling NetworkC8orf88
Wikipedia pathwaysC8orf88
Orthology - Evolution
OrthoDB100127983
GeneTree (enSembl)ENSG00000253250
Phylogenetic Trees/Animal Genes : TreeFamC8orf88
HOVERGENP0DMB2
HOGENOMP0DMB2
Homologs : HomoloGeneC8orf88
Homology/Alignments : Family Browser (UCSC)C8orf88
Gene fusions - Rearrangements
Fusion: Tumor Portal C8orf88
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC8orf88 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C8orf88
dbVarC8orf88
ClinVarC8orf88
1000_GenomesC8orf88 
Exome Variant ServerC8orf88
ExAC (Exome Aggregation Consortium)ENSG00000253250
GNOMAD BrowserENSG00000253250
Genetic variants : HAPMAP100127983
Genomic Variants (DGV)C8orf88 [DGVbeta]
DECIPHERC8orf88 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC8orf88 
Mutations
ICGC Data PortalC8orf88 
TCGA Data PortalC8orf88 
Broad Tumor PortalC8orf88
OASIS PortalC8orf88 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDC8orf88
BioMutasearch C8orf88
DgiDB (Drug Gene Interaction Database)C8orf88
DoCM (Curated mutations)C8orf88 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C8orf88 (select a term)
intoGenC8orf88
Cancer3DC8orf88(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC8orf88
Genetic Testing Registry C8orf88
NextProtP0DMB2 [Medical]
TSGene100127983
GENETestsC8orf88
Target ValidationC8orf88
Huge Navigator C8orf88 [HugePedia]
snp3D : Map Gene to Disease100127983
BioCentury BCIQC8orf88
ClinGenC8orf88
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100127983
Chemical/Pharm GKB GenePA166123669
Clinical trialC8orf88
Miscellaneous
canSAR (ICR)C8orf88 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC8orf88
EVEXC8orf88
GoPubMedC8orf88
iHOPC8orf88
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:40:54 CET 2017

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