Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C8orf89 (chromosome 8 open reading frame 89)

Identity

Other alias-
HGNC (Hugo) C8orf89
LocusID (NCBI) 100130301
Atlas_Id 61297
Location 8q21.11  [Link to chromosome band 8q21]
Location_base_pair Starts at 74153659 and ends at 74171737 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C8orf89   51258
Cards
Entrez_Gene (NCBI)C8orf89  100130301  chromosome 8 open reading frame 89
Aliases
GeneCards (Weizmann)C8orf89
Ensembl hg19 (Hinxton)ENSG00000274443 [Gene_View]  chr8:74153659-74171737 [Contig_View]  C8orf89 [Vega]
Ensembl hg38 (Hinxton)ENSG00000274443 [Gene_View]  chr8:74153659-74171737 [Contig_View]  C8orf89 [Vega]
ICGC DataPortalENSG00000274443
TCGA cBioPortalC8orf89
AceView (NCBI)C8orf89
Genatlas (Paris)C8orf89
WikiGenes100130301
SOURCE (Princeton)C8orf89
Genetics Home Reference (NIH)C8orf89
Genomic and cartography
GoldenPath hg19 (UCSC)C8orf89  -     chr8:74153659-74171737 -  8q21.11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C8orf89  -     8q21.11   [Description]    (hg38-Dec_2013)
EnsemblC8orf89 - 8q21.11 [CytoView hg19]  C8orf89 - 8q21.11 [CytoView hg38]
Mapping of homologs : NCBIC8orf89 [Mapview hg19]  C8orf89 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC150551 BC150552 DT932667
RefSeq transcript (Entrez)NM_001243237
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_008183 NW_004929339
Consensus coding sequences : CCDS (NCBI)C8orf89
Cluster EST : UnigeneHs.202296 [ NCBI ]
CGAP (NCI)Hs.202296
Alternative Splicing GalleryENSG00000274443
Gene ExpressionC8orf89 [ NCBI-GEO ]   C8orf89 [ EBI - ARRAY_EXPRESS ]   C8orf89 [ SEEK ]   C8orf89 [ MEM ]
Gene Expression Viewer (FireBrowse)C8orf89 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100130301
GTEX Portal (Tissue expression)C8orf89
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0DMQ9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0DMQ9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0DMQ9
Splice isoforms : SwissVarP0DMQ9
PhosPhoSitePlusP0DMQ9
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C8orf89
DMDM Disease mutations100130301
Blocks (Seattle)C8orf89
SuperfamilyP0DMQ9
Human Protein AtlasENSG00000274443
Peptide AtlasP0DMQ9
Protein Interaction databases
DIP (DOE-UCLA)P0DMQ9
IntAct (EBI)P0DMQ9
FunCoupENSG00000274443
BioGRIDC8orf89
STRING (EMBL)C8orf89
ZODIACC8orf89
Ontologies - Pathways
QuickGOP0DMQ9
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC8orf89
Atlas of Cancer Signalling NetworkC8orf89
Wikipedia pathwaysC8orf89
Orthology - Evolution
OrthoDB100130301
GeneTree (enSembl)ENSG00000274443
Phylogenetic Trees/Animal Genes : TreeFamC8orf89
HOVERGENP0DMQ9
HOGENOMP0DMQ9
Homologs : HomoloGeneC8orf89
Homology/Alignments : Family Browser (UCSC)C8orf89
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC8orf89 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C8orf89
dbVarC8orf89
ClinVarC8orf89
1000_GenomesC8orf89 
Exome Variant ServerC8orf89
ExAC (Exome Aggregation Consortium)C8orf89 (select the gene name)
Genetic variants : HAPMAP100130301
Genomic Variants (DGV)C8orf89 [DGVbeta]
DECIPHER (Syndromes)8:74153659-74171737  ENSG00000274443
CONAN: Copy Number AnalysisC8orf89 
Mutations
ICGC Data PortalC8orf89 
TCGA Data PortalC8orf89 
Broad Tumor PortalC8orf89
OASIS PortalC8orf89 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDC8orf89
BioMutasearch C8orf89
DgiDB (Drug Gene Interaction Database)C8orf89
DoCM (Curated mutations)C8orf89 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C8orf89 (select a term)
intoGenC8orf89
Cancer3DC8orf89(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC8orf89
Genetic Testing Registry C8orf89
NextProtP0DMQ9 [Medical]
TSGene100130301
GENETestsC8orf89
Huge Navigator C8orf89 [HugePedia]
snp3D : Map Gene to Disease100130301
BioCentury BCIQC8orf89
ClinGenC8orf89
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100130301
Clinical trialC8orf89
Miscellaneous
canSAR (ICR)C8orf89 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC8orf89
EVEXC8orf89
GoPubMedC8orf89
iHOPC8orf89
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:57:43 CET 2017

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