Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C9orf106 (chromosome 9 open reading frame 106)

Identity

Alias_symbol (synonym)bA65J3.5
Other alias
HGNC (Hugo) C9orf106
LocusID (NCBI) 414318
Atlas_Id 61298
Location 9q34.11  [Link to chromosome band 9q34]
Location_base_pair Starts at 129321016 and ends at 129322603 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C9orf106   31370
Cards
Entrez_Gene (NCBI)C9orf106  414318  chromosome 9 open reading frame 106
AliasesbA65J3.5
GeneCards (Weizmann)C9orf106
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr9:129321016-129322603 [Contig_View]  C9orf106 [Vega]
TCGA cBioPortalC9orf106
AceView (NCBI)C9orf106
Genatlas (Paris)C9orf106
WikiGenes414318
SOURCE (Princeton)C9orf106
Genetics Home Reference (NIH)C9orf106
Genomic and cartography
GoldenPath hg38 (UCSC)C9orf106  -     chr9:129321016-129322603 +  9q34.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C9orf106  -     9q34.11   [Description]    (hg19-Feb_2009)
EnsemblC9orf106 - 9q34.11 [CytoView hg19]  C9orf106 - 9q34.11 [CytoView hg38]
Mapping of homologs : NCBIC9orf106 [Mapview hg19]  C9orf106 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK092588 BC132699 BC132701
RefSeq transcript (Entrez)NM_001012715
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C9orf106
Cluster EST : UnigeneHs.449434 [ NCBI ]
CGAP (NCI)Hs.449434
Gene ExpressionC9orf106 [ NCBI-GEO ]   C9orf106 [ EBI - ARRAY_EXPRESS ]   C9orf106 [ SEEK ]   C9orf106 [ MEM ]
Gene Expression Viewer (FireBrowse)C9orf106 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)414318
GTEX Portal (Tissue expression)C9orf106
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NAJ2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NAJ2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NAJ2
Splice isoforms : SwissVarQ8NAJ2
PhosPhoSitePlusQ8NAJ2
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C9orf106
DMDM Disease mutations414318
Blocks (Seattle)C9orf106
SuperfamilyQ8NAJ2
Peptide AtlasQ8NAJ2
HPRD10207
IPIIPI00168019   
Protein Interaction databases
DIP (DOE-UCLA)Q8NAJ2
IntAct (EBI)Q8NAJ2
BioGRIDC9orf106
STRING (EMBL)C9orf106
ZODIACC9orf106
Ontologies - Pathways
QuickGOQ8NAJ2
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC9orf106
Atlas of Cancer Signalling NetworkC9orf106
Wikipedia pathwaysC9orf106
Orthology - Evolution
OrthoDB414318
Phylogenetic Trees/Animal Genes : TreeFamC9orf106
HOVERGENQ8NAJ2
HOGENOMQ8NAJ2
Homologs : HomoloGeneC9orf106
Homology/Alignments : Family Browser (UCSC)C9orf106
Gene fusions - Rearrangements
Fusion: Tumor Portal C9orf106
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC9orf106 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C9orf106
dbVarC9orf106
ClinVarC9orf106
1000_GenomesC9orf106 
Exome Variant ServerC9orf106
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP414318
Genomic Variants (DGV)C9orf106 [DGVbeta]
DECIPHERC9orf106 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC9orf106 
Mutations
ICGC Data PortalC9orf106 
TCGA Data PortalC9orf106 
Broad Tumor PortalC9orf106
OASIS PortalC9orf106 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC9orf106  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC9orf106
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C9orf106
DgiDB (Drug Gene Interaction Database)C9orf106
DoCM (Curated mutations)C9orf106 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C9orf106 (select a term)
intoGenC9orf106
Cancer3DC9orf106(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC9orf106
Genetic Testing Registry C9orf106
NextProtQ8NAJ2 [Medical]
TSGene414318
GENETestsC9orf106
Target ValidationC9orf106
Huge Navigator C9orf106 [HugePedia]
snp3D : Map Gene to Disease414318
BioCentury BCIQC9orf106
ClinGenC9orf106
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD414318
Chemical/Pharm GKB GenePA134931617
Clinical trialC9orf106
Miscellaneous
canSAR (ICR)C9orf106 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC9orf106
EVEXC9orf106
GoPubMedC9orf106
iHOPC9orf106
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:40:54 CET 2017

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