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C9orf116 (chromosome 9 open reading frame 116)

Identity

Alias_symbol (synonym)MGC29761
RbEST47
PIERCE1
Other alias
HGNC (Hugo) C9orf116
LocusID (NCBI) 138162
Atlas_Id 61299
Location 9q34.3  [Link to chromosome band 9q34]
Location_base_pair Starts at 135495180 and ends at 135499915 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C9orf116   28435
Cards
Entrez_Gene (NCBI)C9orf116  138162  chromosome 9 open reading frame 116
AliasesPIERCE1; RbEST47
GeneCards (Weizmann)C9orf116
Ensembl hg19 (Hinxton)ENSG00000160345 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000160345 [Gene_View]  chr9:135495180-135499915 [Contig_View]  C9orf116 [Vega]
ICGC DataPortalENSG00000160345
TCGA cBioPortalC9orf116
AceView (NCBI)C9orf116
Genatlas (Paris)C9orf116
WikiGenes138162
SOURCE (Princeton)C9orf116
Genetics Home Reference (NIH)C9orf116
Genomic and cartography
GoldenPath hg38 (UCSC)C9orf116  -     chr9:135495180-135499915 -  9q34.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C9orf116  -     9q34.3   [Description]    (hg19-Feb_2009)
EnsemblC9orf116 - 9q34.3 [CytoView hg19]  C9orf116 - 9q34.3 [CytoView hg38]
Mapping of homologs : NCBIC9orf116 [Mapview hg19]  C9orf116 [Mapview hg38]
OMIM614502   
Gene and transcription
Genbank (Entrez)AI367252 AI873313 AK024007 AY927868 BC021261
RefSeq transcript (Entrez)NM_001048265 NM_144654
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C9orf116
Cluster EST : UnigeneHs.414028 [ NCBI ]
CGAP (NCI)Hs.414028
Alternative Splicing GalleryENSG00000160345
Gene ExpressionC9orf116 [ NCBI-GEO ]   C9orf116 [ EBI - ARRAY_EXPRESS ]   C9orf116 [ SEEK ]   C9orf116 [ MEM ]
Gene Expression Viewer (FireBrowse)C9orf116 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)138162
GTEX Portal (Tissue expression)C9orf116
Human Protein AtlasENSG00000160345-C9orf116 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5BN46   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5BN46  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5BN46
Splice isoforms : SwissVarQ5BN46
PhosPhoSitePlusQ5BN46
Domains : Interpro (EBI)UPF0691   
Domain families : Pfam (Sanger)DUF4490 (PF14892)   
Domain families : Pfam (NCBI)pfam14892   
Conserved Domain (NCBI)C9orf116
DMDM Disease mutations138162
Blocks (Seattle)C9orf116
SuperfamilyQ5BN46
Human Protein Atlas [tissue]ENSG00000160345-C9orf116 [tissue]
Peptide AtlasQ5BN46
HPRD12937
IPIIPI00514757   IPI00102830   IPI00644051   
Protein Interaction databases
DIP (DOE-UCLA)Q5BN46
IntAct (EBI)Q5BN46
FunCoupENSG00000160345
BioGRIDC9orf116
STRING (EMBL)C9orf116
ZODIACC9orf116
Ontologies - Pathways
QuickGOQ5BN46
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkC9orf116
Atlas of Cancer Signalling NetworkC9orf116
Wikipedia pathwaysC9orf116
Orthology - Evolution
OrthoDB138162
GeneTree (enSembl)ENSG00000160345
Phylogenetic Trees/Animal Genes : TreeFamC9orf116
HOVERGENQ5BN46
HOGENOMQ5BN46
Homologs : HomoloGeneC9orf116
Homology/Alignments : Family Browser (UCSC)C9orf116
Gene fusions - Rearrangements
Tumor Fusion PortalC9orf116
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC9orf116 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C9orf116
dbVarC9orf116
ClinVarC9orf116
1000_GenomesC9orf116 
Exome Variant ServerC9orf116
ExAC (Exome Aggregation Consortium)ENSG00000160345
GNOMAD BrowserENSG00000160345
Genetic variants : HAPMAP138162
Genomic Variants (DGV)C9orf116 [DGVbeta]
DECIPHERC9orf116 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC9orf116 
Mutations
ICGC Data PortalC9orf116 
TCGA Data PortalC9orf116 
Broad Tumor PortalC9orf116
OASIS PortalC9orf116 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC9orf116  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC9orf116
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C9orf116
DgiDB (Drug Gene Interaction Database)C9orf116
DoCM (Curated mutations)C9orf116 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C9orf116 (select a term)
intoGenC9orf116
Cancer3DC9orf116(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614502   
Orphanet
DisGeNETC9orf116
MedgenC9orf116
Genetic Testing Registry C9orf116
NextProtQ5BN46 [Medical]
TSGene138162
GENETestsC9orf116
Target ValidationC9orf116
Huge Navigator C9orf116 [HugePedia]
snp3D : Map Gene to Disease138162
BioCentury BCIQC9orf116
ClinGenC9orf116
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD138162
Chemical/Pharm GKB GenePA134878696
Clinical trialC9orf116
Miscellaneous
canSAR (ICR)C9orf116 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC9orf116
EVEXC9orf116
GoPubMedC9orf116
iHOPC9orf116
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:19:24 CET 2017

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