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C9orf117 (chromosome 9 open reading frame 117)

Identity

Other alias-
HGNC (Hugo) C9orf117
LocusID (NCBI) 286207
Atlas_Id 61300
Location 9q34.11  [Link to chromosome band 9q34]
Location_base_pair Starts at 130469271 and ends at 130476303 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C9orf117   27843
Cards
Entrez_Gene (NCBI)C9orf117  286207  chromosome 9 open reading frame 117
Aliases
GeneCards (Weizmann)C9orf117
Ensembl hg19 (Hinxton)ENSG00000160401 [Gene_View]  chr9:130469271-130476303 [Contig_View]  C9orf117 [Vega]
Ensembl hg38 (Hinxton)ENSG00000160401 [Gene_View]  chr9:130469271-130476303 [Contig_View]  C9orf117 [Vega]
ICGC DataPortalENSG00000160401
TCGA cBioPortalC9orf117
AceView (NCBI)C9orf117
Genatlas (Paris)C9orf117
WikiGenes286207
SOURCE (Princeton)C9orf117
Genetics Home Reference (NIH)C9orf117
Genomic and cartography
GoldenPath hg19 (UCSC)C9orf117  -     chr9:130469271-130476303 +  9q34.11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C9orf117  -     9q34.11   [Description]    (hg38-Dec_2013)
EnsemblC9orf117 - 9q34.11 [CytoView hg19]  C9orf117 - 9q34.11 [CytoView hg38]
Mapping of homologs : NCBIC9orf117 [Mapview hg19]  C9orf117 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK094948 AK126437 AL833241 BC125172 BC133027
RefSeq transcript (Entrez)NM_001012502
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929366
Consensus coding sequences : CCDS (NCBI)C9orf117
Cluster EST : UnigeneHs.652519 [ NCBI ]
CGAP (NCI)Hs.652519
Alternative Splicing GalleryENSG00000160401
Gene ExpressionC9orf117 [ NCBI-GEO ]   C9orf117 [ EBI - ARRAY_EXPRESS ]   C9orf117 [ SEEK ]   C9orf117 [ MEM ]
Gene Expression Viewer (FireBrowse)C9orf117 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)286207
GTEX Portal (Tissue expression)C9orf117
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5JU67   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5JU67  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5JU67
Splice isoforms : SwissVarQ5JU67
PhosPhoSitePlusQ5JU67
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C9orf117
DMDM Disease mutations286207
Blocks (Seattle)C9orf117
SuperfamilyQ5JU67
Human Protein AtlasENSG00000160401
Peptide AtlasQ5JU67
HPRD16673
IPIIPI00175472   IPI00847343   IPI00829928   
Protein Interaction databases
DIP (DOE-UCLA)Q5JU67
IntAct (EBI)Q5JU67
FunCoupENSG00000160401
BioGRIDC9orf117
STRING (EMBL)C9orf117
ZODIACC9orf117
Ontologies - Pathways
QuickGOQ5JU67
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC9orf117
Atlas of Cancer Signalling NetworkC9orf117
Wikipedia pathwaysC9orf117
Orthology - Evolution
OrthoDB286207
GeneTree (enSembl)ENSG00000160401
Phylogenetic Trees/Animal Genes : TreeFamC9orf117
HOVERGENQ5JU67
HOGENOMQ5JU67
Homologs : HomoloGeneC9orf117
Homology/Alignments : Family Browser (UCSC)C9orf117
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC9orf117 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C9orf117
dbVarC9orf117
ClinVarC9orf117
1000_GenomesC9orf117 
Exome Variant ServerC9orf117
ExAC (Exome Aggregation Consortium)C9orf117 (select the gene name)
Genetic variants : HAPMAP286207
Genomic Variants (DGV)C9orf117 [DGVbeta]
DECIPHER (Syndromes)9:130469271-130476303  ENSG00000160401
CONAN: Copy Number AnalysisC9orf117 
Mutations
ICGC Data PortalC9orf117 
TCGA Data PortalC9orf117 
Broad Tumor PortalC9orf117
OASIS PortalC9orf117 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC9orf117  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC9orf117
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C9orf117
DgiDB (Drug Gene Interaction Database)C9orf117
DoCM (Curated mutations)C9orf117 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C9orf117 (select a term)
intoGenC9orf117
Cancer3DC9orf117(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC9orf117
Genetic Testing Registry C9orf117
NextProtQ5JU67 [Medical]
TSGene286207
GENETestsC9orf117
Huge Navigator C9orf117 [HugePedia]
snp3D : Map Gene to Disease286207
BioCentury BCIQC9orf117
ClinGenC9orf117
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD286207
Chemical/Pharm GKB GenePA134929148
Clinical trialC9orf117
Miscellaneous
canSAR (ICR)C9orf117 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC9orf117
EVEXC9orf117
GoPubMedC9orf117
iHOPC9orf117
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:57:43 CET 2017

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