Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C9orf129 (chromosome 9 open reading frame 129)

Identity

Alias_symbol (synonym)bA165J3.3
Other alias
HGNC (Hugo) C9orf129
LocusID (NCBI) 445577
Atlas_Id 61301
Location 9q22.31  [Link to chromosome band 9q22]
Location_base_pair Starts at 96080481 and ends at 96108696 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C9orf129   31116
Cards
Entrez_Gene (NCBI)C9orf129  445577  chromosome 9 open reading frame 129
AliasesbA165J3.3
GeneCards (Weizmann)C9orf129
Ensembl hg19 (Hinxton)ENSG00000204352 [Gene_View]  chr9:96080481-96108696 [Contig_View]  C9orf129 [Vega]
Ensembl hg38 (Hinxton)ENSG00000204352 [Gene_View]  chr9:96080481-96108696 [Contig_View]  C9orf129 [Vega]
ICGC DataPortalENSG00000204352
TCGA cBioPortalC9orf129
AceView (NCBI)C9orf129
Genatlas (Paris)C9orf129
WikiGenes445577
SOURCE (Princeton)C9orf129
Genetics Home Reference (NIH)C9orf129
Genomic and cartography
GoldenPath hg19 (UCSC)C9orf129  -     chr9:96080481-96108696 -  9q22.31   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C9orf129  -     9q22.31   [Description]    (hg38-Dec_2013)
EnsemblC9orf129 - 9q22.31 [CytoView hg19]  C9orf129 - 9q22.31 [CytoView hg38]
Mapping of homologs : NCBIC9orf129 [Mapview hg19]  C9orf129 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001098808
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929366
Consensus coding sequences : CCDS (NCBI)C9orf129
Cluster EST : UnigeneHs.575636 [ NCBI ]
CGAP (NCI)Hs.575636
Alternative Splicing GalleryENSG00000204352
Gene ExpressionC9orf129 [ NCBI-GEO ]   C9orf129 [ EBI - ARRAY_EXPRESS ]   C9orf129 [ SEEK ]   C9orf129 [ MEM ]
Gene Expression Viewer (FireBrowse)C9orf129 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)445577
GTEX Portal (Tissue expression)C9orf129
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T035   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T035  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T035
Splice isoforms : SwissVarQ5T035
PhosPhoSitePlusQ5T035
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C9orf129
DMDM Disease mutations445577
Blocks (Seattle)C9orf129
SuperfamilyQ5T035
Human Protein AtlasENSG00000204352
Peptide AtlasQ5T035
IPIIPI00515110   
Protein Interaction databases
DIP (DOE-UCLA)Q5T035
IntAct (EBI)Q5T035
FunCoupENSG00000204352
BioGRIDC9orf129
STRING (EMBL)C9orf129
ZODIACC9orf129
Ontologies - Pathways
QuickGOQ5T035
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC9orf129
Atlas of Cancer Signalling NetworkC9orf129
Wikipedia pathwaysC9orf129
Orthology - Evolution
OrthoDB445577
GeneTree (enSembl)ENSG00000204352
Phylogenetic Trees/Animal Genes : TreeFamC9orf129
HOVERGENQ5T035
HOGENOMQ5T035
Homologs : HomoloGeneC9orf129
Homology/Alignments : Family Browser (UCSC)C9orf129
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC9orf129 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C9orf129
dbVarC9orf129
ClinVarC9orf129
1000_GenomesC9orf129 
Exome Variant ServerC9orf129
ExAC (Exome Aggregation Consortium)C9orf129 (select the gene name)
Genetic variants : HAPMAP445577
Genomic Variants (DGV)C9orf129 [DGVbeta]
DECIPHER (Syndromes)9:96080481-96108696  ENSG00000204352
CONAN: Copy Number AnalysisC9orf129 
Mutations
ICGC Data PortalC9orf129 
TCGA Data PortalC9orf129 
Broad Tumor PortalC9orf129
OASIS PortalC9orf129 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC9orf129  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC9orf129
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C9orf129
DgiDB (Drug Gene Interaction Database)C9orf129
DoCM (Curated mutations)C9orf129 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C9orf129 (select a term)
intoGenC9orf129
Cancer3DC9orf129(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC9orf129
Genetic Testing Registry C9orf129
NextProtQ5T035 [Medical]
TSGene445577
GENETestsC9orf129
Huge Navigator C9orf129 [HugePedia]
snp3D : Map Gene to Disease445577
BioCentury BCIQC9orf129
ClinGenC9orf129
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD445577
Chemical/Pharm GKB GenePA134884589
Clinical trialC9orf129
Miscellaneous
canSAR (ICR)C9orf129 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC9orf129
EVEXC9orf129
GoPubMedC9orf129
iHOPC9orf129
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:57:44 CET 2017

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