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C9orf131 (chromosome 9 open reading frame 131)

Identity

Alias_symbol (synonym)MGC41945
Other alias-
HGNC (Hugo) C9orf131
LocusID (NCBI) 138724
Atlas_Id 61302
Location 9p13.3  [Link to chromosome band 9p13]
Location_base_pair Starts at 35042208 and ends at 35045991 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
VCP (9p13.3) / C9orf131 (9p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C9orf131   31418
Cards
Entrez_Gene (NCBI)C9orf131  138724  chromosome 9 open reading frame 131
Aliases
GeneCards (Weizmann)C9orf131
Ensembl hg19 (Hinxton)ENSG00000174038 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000174038 [Gene_View]  chr9:35042208-35045991 [Contig_View]  C9orf131 [Vega]
ICGC DataPortalENSG00000174038
TCGA cBioPortalC9orf131
AceView (NCBI)C9orf131
Genatlas (Paris)C9orf131
WikiGenes138724
SOURCE (Princeton)C9orf131
Genetics Home Reference (NIH)C9orf131
Genomic and cartography
GoldenPath hg38 (UCSC)C9orf131  -     chr9:35042208-35045991 +  9p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C9orf131  -     9p13.3   [Description]    (hg19-Feb_2009)
EnsemblC9orf131 - 9p13.3 [CytoView hg19]  C9orf131 - 9p13.3 [CytoView hg38]
Mapping of homologs : NCBIC9orf131 [Mapview hg19]  C9orf131 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK090398 AK097595 AK302123 AL133575 BC045643
RefSeq transcript (Entrez)NM_001040410 NM_001040411 NM_001040412 NM_001287391 NM_203299
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C9orf131
Cluster EST : UnigeneHs.742567 [ NCBI ]
CGAP (NCI)Hs.742567
Alternative Splicing GalleryENSG00000174038
Gene ExpressionC9orf131 [ NCBI-GEO ]   C9orf131 [ EBI - ARRAY_EXPRESS ]   C9orf131 [ SEEK ]   C9orf131 [ MEM ]
Gene Expression Viewer (FireBrowse)C9orf131 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)138724
GTEX Portal (Tissue expression)C9orf131
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VYM1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VYM1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VYM1
Splice isoforms : SwissVarQ5VYM1
PhosPhoSitePlusQ5VYM1
Domains : Interpro (EBI)UPF_C9orf131   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C9orf131
DMDM Disease mutations138724
Blocks (Seattle)C9orf131
SuperfamilyQ5VYM1
Human Protein AtlasENSG00000174038
Peptide AtlasQ5VYM1
HPRD14616
IPIIPI00398256   IPI00910618   IPI00168799   IPI00745026   IPI00745209   IPI00744439   IPI01010092   IPI00939449   IPI01011648   
Protein Interaction databases
DIP (DOE-UCLA)Q5VYM1
IntAct (EBI)Q5VYM1
FunCoupENSG00000174038
BioGRIDC9orf131
STRING (EMBL)C9orf131
ZODIACC9orf131
Ontologies - Pathways
QuickGOQ5VYM1
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC9orf131
Atlas of Cancer Signalling NetworkC9orf131
Wikipedia pathwaysC9orf131
Orthology - Evolution
OrthoDB138724
GeneTree (enSembl)ENSG00000174038
Phylogenetic Trees/Animal Genes : TreeFamC9orf131
HOVERGENQ5VYM1
HOGENOMQ5VYM1
Homologs : HomoloGeneC9orf131
Homology/Alignments : Family Browser (UCSC)C9orf131
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC9orf131 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C9orf131
dbVarC9orf131
ClinVarC9orf131
1000_GenomesC9orf131 
Exome Variant ServerC9orf131
ExAC (Exome Aggregation Consortium)C9orf131 (select the gene name)
Genetic variants : HAPMAP138724
Genomic Variants (DGV)C9orf131 [DGVbeta]
DECIPHERC9orf131 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC9orf131 
Mutations
ICGC Data PortalC9orf131 
TCGA Data PortalC9orf131 
Broad Tumor PortalC9orf131
OASIS PortalC9orf131 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC9orf131  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC9orf131
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C9orf131
DgiDB (Drug Gene Interaction Database)C9orf131
DoCM (Curated mutations)C9orf131 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C9orf131 (select a term)
intoGenC9orf131
Cancer3DC9orf131(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC9orf131
Genetic Testing Registry C9orf131
NextProtQ5VYM1 [Medical]
TSGene138724
GENETestsC9orf131
Target ValidationC9orf131
Huge Navigator C9orf131 [HugePedia]
snp3D : Map Gene to Disease138724
BioCentury BCIQC9orf131
ClinGenC9orf131
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD138724
Chemical/Pharm GKB GenePA145149697
Clinical trialC9orf131
Miscellaneous
canSAR (ICR)C9orf131 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC9orf131
EVEXC9orf131
GoPubMedC9orf131
iHOPC9orf131
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:03:36 CEST 2017

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