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C9orf135 (chromosome 9 open reading frame 135)

Identity

Other alias-
HGNC (Hugo) C9orf135
LocusID (NCBI) 138255
Atlas_Id 61303
Location 9q21.12  [Link to chromosome band 9q21]
Location_base_pair Starts at 72435721 and ends at 72521151 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C9orf135   31422
Cards
Entrez_Gene (NCBI)C9orf135  138255  chromosome 9 open reading frame 135
Aliases
GeneCards (Weizmann)C9orf135
Ensembl hg19 (Hinxton)ENSG00000204711 [Gene_View]  chr9:72435721-72521151 [Contig_View]  C9orf135 [Vega]
Ensembl hg38 (Hinxton)ENSG00000204711 [Gene_View]  chr9:72435721-72521151 [Contig_View]  C9orf135 [Vega]
ICGC DataPortalENSG00000204711
TCGA cBioPortalC9orf135
AceView (NCBI)C9orf135
Genatlas (Paris)C9orf135
WikiGenes138255
SOURCE (Princeton)C9orf135
Genetics Home Reference (NIH)C9orf135
Genomic and cartography
GoldenPath hg19 (UCSC)C9orf135  -     chr9:72435721-72521151 +  9q21.12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C9orf135  -     9q21.12   [Description]    (hg38-Dec_2013)
EnsemblC9orf135 - 9q21.12 [CytoView hg19]  C9orf135 - 9q21.12 [CytoView hg38]
Mapping of homologs : NCBIC9orf135 [Mapview hg19]  C9orf135 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA416734 AW014133 BC136709 BC144373 BC144374
RefSeq transcript (Entrez)NM_001010940 NM_001308084 NM_001308085 NM_001308086
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929366
Consensus coding sequences : CCDS (NCBI)C9orf135
Cluster EST : UnigeneHs.444459 [ NCBI ]
CGAP (NCI)Hs.444459
Alternative Splicing GalleryENSG00000204711
Gene ExpressionC9orf135 [ NCBI-GEO ]   C9orf135 [ EBI - ARRAY_EXPRESS ]   C9orf135 [ SEEK ]   C9orf135 [ MEM ]
Gene Expression Viewer (FireBrowse)C9orf135 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)138255
GTEX Portal (Tissue expression)C9orf135
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VTT2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VTT2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VTT2
Splice isoforms : SwissVarQ5VTT2
PhosPhoSitePlusQ5VTT2
Domains : Interpro (EBI)DUF4572   
Domain families : Pfam (Sanger)DUF4572 (PF15139)   
Domain families : Pfam (NCBI)pfam15139   
Conserved Domain (NCBI)C9orf135
DMDM Disease mutations138255
Blocks (Seattle)C9orf135
SuperfamilyQ5VTT2
Human Protein AtlasENSG00000204711
Peptide AtlasQ5VTT2
HPRD17298
IPIIPI00163735   IPI00855726   IPI00978872   IPI00980294   IPI00980866   
Protein Interaction databases
DIP (DOE-UCLA)Q5VTT2
IntAct (EBI)Q5VTT2
FunCoupENSG00000204711
BioGRIDC9orf135
STRING (EMBL)C9orf135
ZODIACC9orf135
Ontologies - Pathways
QuickGOQ5VTT2
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkC9orf135
Atlas of Cancer Signalling NetworkC9orf135
Wikipedia pathwaysC9orf135
Orthology - Evolution
OrthoDB138255
GeneTree (enSembl)ENSG00000204711
Phylogenetic Trees/Animal Genes : TreeFamC9orf135
HOVERGENQ5VTT2
HOGENOMQ5VTT2
Homologs : HomoloGeneC9orf135
Homology/Alignments : Family Browser (UCSC)C9orf135
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC9orf135 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C9orf135
dbVarC9orf135
ClinVarC9orf135
1000_GenomesC9orf135 
Exome Variant ServerC9orf135
ExAC (Exome Aggregation Consortium)C9orf135 (select the gene name)
Genetic variants : HAPMAP138255
Genomic Variants (DGV)C9orf135 [DGVbeta]
DECIPHER (Syndromes)9:72435721-72521151  ENSG00000204711
CONAN: Copy Number AnalysisC9orf135 
Mutations
ICGC Data PortalC9orf135 
TCGA Data PortalC9orf135 
Broad Tumor PortalC9orf135
OASIS PortalC9orf135 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC9orf135  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC9orf135
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C9orf135
DgiDB (Drug Gene Interaction Database)C9orf135
DoCM (Curated mutations)C9orf135 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C9orf135 (select a term)
intoGenC9orf135
Cancer3DC9orf135(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC9orf135
Genetic Testing Registry C9orf135
NextProtQ5VTT2 [Medical]
TSGene138255
GENETestsC9orf135
Huge Navigator C9orf135 [HugePedia]
snp3D : Map Gene to Disease138255
BioCentury BCIQC9orf135
ClinGenC9orf135
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD138255
Chemical/Pharm GKB GenePA145149705
Clinical trialC9orf135
Miscellaneous
canSAR (ICR)C9orf135 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC9orf135
EVEXC9orf135
GoPubMedC9orf135
iHOPC9orf135
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:57:44 CET 2017

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