Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C9orf139 (chromosome 9 open reading frame 139)

Identity

Alias_symbol (synonym)FLJ36268
FLJ42909
Other alias-
HGNC (Hugo) C9orf139
LocusID (NCBI) 401563
Atlas_Id 61305
Location 9q34.3  [Link to chromosome band 9q34]
Location_base_pair Starts at 137027464 and ends at 137036782 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C9orf139   31426
Cards
Entrez_Gene (NCBI)C9orf139  401563  chromosome 9 open reading frame 139
Aliases
GeneCards (Weizmann)C9orf139
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr9:137027464-137036782 [Contig_View]  C9orf139 [Vega]
TCGA cBioPortalC9orf139
AceView (NCBI)C9orf139
Genatlas (Paris)C9orf139
WikiGenes401563
SOURCE (Princeton)C9orf139
Genetics Home Reference (NIH)C9orf139
Genomic and cartography
GoldenPath hg38 (UCSC)C9orf139  -     chr9:137027464-137036782 +  9q34.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C9orf139  -     9q34.3   [Description]    (hg19-Feb_2009)
EnsemblC9orf139 - 9q34.3 [CytoView hg19]  C9orf139 - 9q34.3 [CytoView hg38]
Mapping of homologs : NCBIC9orf139 [Mapview hg19]  C9orf139 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK093587 AK124899 BC132809 BC136839 HQ258737
RefSeq transcript (Entrez)NM_207511
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C9orf139
Cluster EST : UnigeneHs.522509 [ NCBI ]
CGAP (NCI)Hs.522509
Gene ExpressionC9orf139 [ NCBI-GEO ]   C9orf139 [ EBI - ARRAY_EXPRESS ]   C9orf139 [ SEEK ]   C9orf139 [ MEM ]
Gene Expression Viewer (FireBrowse)C9orf139 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)401563
GTEX Portal (Tissue expression)C9orf139
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZV77   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZV77  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZV77
Splice isoforms : SwissVarQ6ZV77
PhosPhoSitePlusQ6ZV77
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C9orf139
DMDM Disease mutations401563
Blocks (Seattle)C9orf139
SuperfamilyQ6ZV77
Peptide AtlasQ6ZV77
HPRD16942
IPIIPI00401287   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZV77
IntAct (EBI)Q6ZV77
BioGRIDC9orf139
STRING (EMBL)C9orf139
ZODIACC9orf139
Ontologies - Pathways
QuickGOQ6ZV77
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC9orf139
Atlas of Cancer Signalling NetworkC9orf139
Wikipedia pathwaysC9orf139
Orthology - Evolution
OrthoDB401563
Phylogenetic Trees/Animal Genes : TreeFamC9orf139
HOVERGENQ6ZV77
HOGENOMQ6ZV77
Homologs : HomoloGeneC9orf139
Homology/Alignments : Family Browser (UCSC)C9orf139
Gene fusions - Rearrangements
Tumor Fusion PortalC9orf139
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC9orf139 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C9orf139
dbVarC9orf139
ClinVarC9orf139
1000_GenomesC9orf139 
Exome Variant ServerC9orf139
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP401563
Genomic Variants (DGV)C9orf139 [DGVbeta]
DECIPHERC9orf139 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC9orf139 
Mutations
ICGC Data PortalC9orf139 
TCGA Data PortalC9orf139 
Broad Tumor PortalC9orf139
OASIS PortalC9orf139 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC9orf139  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC9orf139
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C9orf139
DgiDB (Drug Gene Interaction Database)C9orf139
DoCM (Curated mutations)C9orf139 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C9orf139 (select a term)
intoGenC9orf139
Cancer3DC9orf139(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETC9orf139
MedgenC9orf139
Genetic Testing Registry C9orf139
NextProtQ6ZV77 [Medical]
TSGene401563
GENETestsC9orf139
Target ValidationC9orf139
Huge Navigator C9orf139 [HugePedia]
snp3D : Map Gene to Disease401563
BioCentury BCIQC9orf139
ClinGenC9orf139
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD401563
Chemical/Pharm GKB GenePA145149721
Clinical trialC9orf139
Miscellaneous
canSAR (ICR)C9orf139 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC9orf139
EVEXC9orf139
GoPubMedC9orf139
iHOPC9orf139
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:19:25 CET 2017

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