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C9orf142 (chromosome 9 open reading frame 142)

Identity

Alias_symbol (synonym)PAXX
XLS
Other alias
HGNC (Hugo) C9orf142
LocusID (NCBI) 286257
Atlas_Id 55132
Location 9q34.3  [Link to chromosome band 9q34]
Location_base_pair Starts at 136992418 and ends at 136993988 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C9orf142   27849
Cards
Entrez_Gene (NCBI)C9orf142  286257  chromosome 9 open reading frame 142
AliasesPAXX; XLS
GeneCards (Weizmann)C9orf142
Ensembl hg19 (Hinxton)ENSG00000148362 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000148362 [Gene_View]  chr9:136992418-136993988 [Contig_View]  C9orf142 [Vega]
ICGC DataPortalENSG00000148362
TCGA cBioPortalC9orf142
AceView (NCBI)C9orf142
Genatlas (Paris)C9orf142
WikiGenes286257
SOURCE (Princeton)C9orf142
Genetics Home Reference (NIH)C9orf142
Genomic and cartography
GoldenPath hg38 (UCSC)C9orf142  -     chr9:136992418-136993988 +  9q34.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C9orf142  -     9q34.3   [Description]    (hg19-Feb_2009)
EnsemblC9orf142 - 9q34.3 [CytoView hg19]  C9orf142 - 9q34.3 [CytoView hg38]
Mapping of homologs : NCBIC9orf142 [Mapview hg19]  C9orf142 [Mapview hg38]
OMIM616315   
Gene and transcription
Genbank (Entrez)AA404597 BC002613 BC038191 HQ447605
RefSeq transcript (Entrez)NM_001329678 NM_183241
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C9orf142
Cluster EST : UnigeneHs.409582 [ NCBI ]
CGAP (NCI)Hs.409582
Alternative Splicing GalleryENSG00000148362
Gene ExpressionC9orf142 [ NCBI-GEO ]   C9orf142 [ EBI - ARRAY_EXPRESS ]   C9orf142 [ SEEK ]   C9orf142 [ MEM ]
Gene Expression Viewer (FireBrowse)C9orf142 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)286257
GTEX Portal (Tissue expression)C9orf142
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BUH6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BUH6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BUH6
Splice isoforms : SwissVarQ9BUH6
PhosPhoSitePlusQ9BUH6
Domains : Interpro (EBI)PAXX   
Domain families : Pfam (Sanger)PAXX (PF15384)   
Domain families : Pfam (NCBI)pfam15384   
Conserved Domain (NCBI)C9orf142
DMDM Disease mutations286257
Blocks (Seattle)C9orf142
PDB (SRS)3WTD    3WTF    4WJA   
PDB (PDBSum)3WTD    3WTF    4WJA   
PDB (IMB)3WTD    3WTF    4WJA   
PDB (RSDB)3WTD    3WTF    4WJA   
Structural Biology KnowledgeBase3WTD    3WTF    4WJA   
SCOP (Structural Classification of Proteins)3WTD    3WTF    4WJA   
CATH (Classification of proteins structures)3WTD    3WTF    4WJA   
SuperfamilyQ9BUH6
Human Protein AtlasENSG00000148362
Peptide AtlasQ9BUH6
HPRD14163
IPIIPI00030968   IPI00845499   
Protein Interaction databases
DIP (DOE-UCLA)Q9BUH6
IntAct (EBI)Q9BUH6
FunCoupENSG00000148362
BioGRIDC9orf142
STRING (EMBL)C9orf142
ZODIACC9orf142
Ontologies - Pathways
QuickGOQ9BUH6
Ontology : AmiGOprotein binding  nucleus  double-strand break repair via nonhomologous end joining  cellular response to DNA damage stimulus  protein complex scaffold  site of double-strand break  protein homodimerization activity  Ku70:Ku80 complex  DNA ligation involved in DNA repair  extracellular exosome  nonhomologous end joining complex  
Ontology : EGO-EBIprotein binding  nucleus  double-strand break repair via nonhomologous end joining  cellular response to DNA damage stimulus  protein complex scaffold  site of double-strand break  protein homodimerization activity  Ku70:Ku80 complex  DNA ligation involved in DNA repair  extracellular exosome  nonhomologous end joining complex  
NDEx NetworkC9orf142
Atlas of Cancer Signalling NetworkC9orf142
Wikipedia pathwaysC9orf142
Orthology - Evolution
OrthoDB286257
GeneTree (enSembl)ENSG00000148362
Phylogenetic Trees/Animal Genes : TreeFamC9orf142
HOVERGENQ9BUH6
HOGENOMQ9BUH6
Homologs : HomoloGeneC9orf142
Homology/Alignments : Family Browser (UCSC)C9orf142
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC9orf142 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C9orf142
dbVarC9orf142
ClinVarC9orf142
1000_GenomesC9orf142 
Exome Variant ServerC9orf142
ExAC (Exome Aggregation Consortium)C9orf142 (select the gene name)
Genetic variants : HAPMAP286257
Genomic Variants (DGV)C9orf142 [DGVbeta]
DECIPHERC9orf142 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC9orf142 
Mutations
ICGC Data PortalC9orf142 
TCGA Data PortalC9orf142 
Broad Tumor PortalC9orf142
OASIS PortalC9orf142 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC9orf142  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC9orf142
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C9orf142
DgiDB (Drug Gene Interaction Database)C9orf142
DoCM (Curated mutations)C9orf142 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C9orf142 (select a term)
intoGenC9orf142
Cancer3DC9orf142(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616315   
Orphanet
MedgenC9orf142
Genetic Testing Registry C9orf142
NextProtQ9BUH6 [Medical]
TSGene286257
GENETestsC9orf142
Target ValidationC9orf142
Huge Navigator C9orf142 [HugePedia]
snp3D : Map Gene to Disease286257
BioCentury BCIQC9orf142
ClinGenC9orf142
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD286257
Chemical/Pharm GKB GenePA143485344
Clinical trialC9orf142
Miscellaneous
canSAR (ICR)C9orf142 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC9orf142
EVEXC9orf142
GoPubMedC9orf142
iHOPC9orf142
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:56:35 CEST 2017

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