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C9orf152 (chromosome 9 open reading frame 152)

Identity

Alias_symbol (synonym)bA470J20.2
Other alias
HGNC (Hugo) C9orf152
LocusID (NCBI) 401546
Atlas_Id 61308
Location 9q31.3  [Link to chromosome band 9q31]
Location_base_pair Starts at 110199566 and ends at 110208133 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
C9orf152 (9q31.3) / NDE1 (16p13.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C9orf152   31455
Cards
Entrez_Gene (NCBI)C9orf152  401546  chromosome 9 open reading frame 152
AliasesbA470J20.2
GeneCards (Weizmann)C9orf152
Ensembl hg19 (Hinxton)ENSG00000188959 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188959 [Gene_View]  chr9:110199566-110208133 [Contig_View]  C9orf152 [Vega]
ICGC DataPortalENSG00000188959
TCGA cBioPortalC9orf152
AceView (NCBI)C9orf152
Genatlas (Paris)C9orf152
WikiGenes401546
SOURCE (Princeton)C9orf152
Genetics Home Reference (NIH)C9orf152
Genomic and cartography
GoldenPath hg38 (UCSC)C9orf152  -     chr9:110199566-110208133 -  9q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C9orf152  -     9q31.3   [Description]    (hg19-Feb_2009)
EnsemblC9orf152 - 9q31.3 [CytoView hg19]  C9orf152 - 9q31.3 [CytoView hg38]
Mapping of homologs : NCBIC9orf152 [Mapview hg19]  C9orf152 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK290278 BC110807 BX648492 BX648620 CD722791
RefSeq transcript (Entrez)NM_001012993
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C9orf152
Cluster EST : UnigeneHs.125608 [ NCBI ]
CGAP (NCI)Hs.125608
Alternative Splicing GalleryENSG00000188959
Gene ExpressionC9orf152 [ NCBI-GEO ]   C9orf152 [ EBI - ARRAY_EXPRESS ]   C9orf152 [ SEEK ]   C9orf152 [ MEM ]
Gene Expression Viewer (FireBrowse)C9orf152 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)401546
GTEX Portal (Tissue expression)C9orf152
Human Protein AtlasENSG00000188959-C9orf152 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5JTZ5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5JTZ5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5JTZ5
Splice isoforms : SwissVarQ5JTZ5
PhosPhoSitePlusQ5JTZ5
Domains : Interpro (EBI)Tbc1d30_C   
Domain families : Pfam (Sanger)DUF4682 (PF15733)   
Domain families : Pfam (NCBI)pfam15733   
Conserved Domain (NCBI)C9orf152
DMDM Disease mutations401546
Blocks (Seattle)C9orf152
SuperfamilyQ5JTZ5
Human Protein Atlas [tissue]ENSG00000188959-C9orf152 [tissue]
Peptide AtlasQ5JTZ5
HPRD10249
IPIIPI00412850   
Protein Interaction databases
DIP (DOE-UCLA)Q5JTZ5
IntAct (EBI)Q5JTZ5
FunCoupENSG00000188959
BioGRIDC9orf152
STRING (EMBL)C9orf152
ZODIACC9orf152
Ontologies - Pathways
QuickGOQ5JTZ5
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC9orf152
Atlas of Cancer Signalling NetworkC9orf152
Wikipedia pathwaysC9orf152
Orthology - Evolution
OrthoDB401546
GeneTree (enSembl)ENSG00000188959
Phylogenetic Trees/Animal Genes : TreeFamC9orf152
HOVERGENQ5JTZ5
HOGENOMQ5JTZ5
Homologs : HomoloGeneC9orf152
Homology/Alignments : Family Browser (UCSC)C9orf152
Gene fusions - Rearrangements
Fusion: Tumor Portal C9orf152
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC9orf152 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C9orf152
dbVarC9orf152
ClinVarC9orf152
1000_GenomesC9orf152 
Exome Variant ServerC9orf152
ExAC (Exome Aggregation Consortium)ENSG00000188959
GNOMAD BrowserENSG00000188959
Genetic variants : HAPMAP401546
Genomic Variants (DGV)C9orf152 [DGVbeta]
DECIPHERC9orf152 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC9orf152 
Mutations
ICGC Data PortalC9orf152 
TCGA Data PortalC9orf152 
Broad Tumor PortalC9orf152
OASIS PortalC9orf152 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC9orf152  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC9orf152
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C9orf152
DgiDB (Drug Gene Interaction Database)C9orf152
DoCM (Curated mutations)C9orf152 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C9orf152 (select a term)
intoGenC9orf152
Cancer3DC9orf152(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC9orf152
Genetic Testing Registry C9orf152
NextProtQ5JTZ5 [Medical]
TSGene401546
GENETestsC9orf152
Target ValidationC9orf152
Huge Navigator C9orf152 [HugePedia]
snp3D : Map Gene to Disease401546
BioCentury BCIQC9orf152
ClinGenC9orf152
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD401546
Chemical/Pharm GKB GenePA134988229
Clinical trialC9orf152
Miscellaneous
canSAR (ICR)C9orf152 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC9orf152
EVEXC9orf152
GoPubMedC9orf152
iHOPC9orf152
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:40:56 CET 2017

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