Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

C9orf153 (chromosome 9 open reading frame 153)

Identity

Alias_symbol (synonym)bA507D14.1
Other alias
HGNC (Hugo) C9orf153
LocusID (NCBI) 389766
Atlas_Id 61309
Location 9q21.33  [Link to chromosome band 9q21]
Location_base_pair Starts at 88835180 and ends at 88874572 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C9orf153   31456
Cards
Entrez_Gene (NCBI)C9orf153  389766  chromosome 9 open reading frame 153
AliasesbA507D14.1
GeneCards (Weizmann)C9orf153
Ensembl hg19 (Hinxton)ENSG00000187753 [Gene_View]  chr9:88835180-88874572 [Contig_View]  C9orf153 [Vega]
Ensembl hg38 (Hinxton)ENSG00000187753 [Gene_View]  chr9:88835180-88874572 [Contig_View]  C9orf153 [Vega]
ICGC DataPortalENSG00000187753
TCGA cBioPortalC9orf153
AceView (NCBI)C9orf153
Genatlas (Paris)C9orf153
WikiGenes389766
SOURCE (Princeton)C9orf153
Genetics Home Reference (NIH)C9orf153
Genomic and cartography
GoldenPath hg19 (UCSC)C9orf153  -     chr9:88835180-88874572 -  9q21.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C9orf153  -     9q21.33   [Description]    (hg38-Dec_2013)
EnsemblC9orf153 - 9q21.33 [CytoView hg19]  C9orf153 - 9q21.33 [CytoView hg38]
Mapping of homologs : NCBIC9orf153 [Mapview hg19]  C9orf153 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC108665 BG772848 BI827110
RefSeq transcript (Entrez)NM_001010907 NM_001276366 NM_001276367 NM_001276368
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929366
Consensus coding sequences : CCDS (NCBI)C9orf153
Cluster EST : UnigeneHs.632073 [ NCBI ]
CGAP (NCI)Hs.632073
Alternative Splicing GalleryENSG00000187753
Gene ExpressionC9orf153 [ NCBI-GEO ]   C9orf153 [ EBI - ARRAY_EXPRESS ]   C9orf153 [ SEEK ]   C9orf153 [ MEM ]
Gene Expression Viewer (FireBrowse)C9orf153 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)389766
GTEX Portal (Tissue expression)C9orf153
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5TBE3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5TBE3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5TBE3
Splice isoforms : SwissVarQ5TBE3
PhosPhoSitePlusQ5TBE3
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C9orf153
DMDM Disease mutations389766
Blocks (Seattle)C9orf153
SuperfamilyQ5TBE3
Human Protein AtlasENSG00000187753
Peptide AtlasQ5TBE3
HPRD16677
IPIIPI00514957   IPI00646800   
Protein Interaction databases
DIP (DOE-UCLA)Q5TBE3
IntAct (EBI)Q5TBE3
FunCoupENSG00000187753
BioGRIDC9orf153
STRING (EMBL)C9orf153
ZODIACC9orf153
Ontologies - Pathways
QuickGOQ5TBE3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC9orf153
Atlas of Cancer Signalling NetworkC9orf153
Wikipedia pathwaysC9orf153
Orthology - Evolution
OrthoDB389766
GeneTree (enSembl)ENSG00000187753
Phylogenetic Trees/Animal Genes : TreeFamC9orf153
HOVERGENQ5TBE3
HOGENOMQ5TBE3
Homologs : HomoloGeneC9orf153
Homology/Alignments : Family Browser (UCSC)C9orf153
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC9orf153 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C9orf153
dbVarC9orf153
ClinVarC9orf153
1000_GenomesC9orf153 
Exome Variant ServerC9orf153
ExAC (Exome Aggregation Consortium)C9orf153 (select the gene name)
Genetic variants : HAPMAP389766
Genomic Variants (DGV)C9orf153 [DGVbeta]
DECIPHER (Syndromes)9:88835180-88874572  ENSG00000187753
CONAN: Copy Number AnalysisC9orf153 
Mutations
ICGC Data PortalC9orf153 
TCGA Data PortalC9orf153 
Broad Tumor PortalC9orf153
OASIS PortalC9orf153 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC9orf153  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC9orf153
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C9orf153
DgiDB (Drug Gene Interaction Database)C9orf153
DoCM (Curated mutations)C9orf153 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C9orf153 (select a term)
intoGenC9orf153
Cancer3DC9orf153(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC9orf153
Genetic Testing Registry C9orf153
NextProtQ5TBE3 [Medical]
TSGene389766
GENETestsC9orf153
Huge Navigator C9orf153 [HugePedia]
snp3D : Map Gene to Disease389766
BioCentury BCIQC9orf153
ClinGenC9orf153
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD389766
Chemical/Pharm GKB GenePA134962664
Clinical trialC9orf153
Miscellaneous
canSAR (ICR)C9orf153 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC9orf153
EVEXC9orf153
GoPubMedC9orf153
iHOPC9orf153
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:57:45 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.