Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

C9orf156 (chromosome 9 open reading frame 156)

Identity

Other aliasHSPC219
NAP1
HGNC (Hugo) C9orf156
LocusID (NCBI) 51531
Atlas_Id 61310
Location 9q22.33  [Link to chromosome band 9q22]
Location_base_pair Starts at 100666771 and ends at 100684852 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C9orf156   30967
Cards
Entrez_Gene (NCBI)C9orf156  51531  chromosome 9 open reading frame 156
AliasesHSPC219; NAP1
GeneCards (Weizmann)C9orf156
Ensembl hg19 (Hinxton)ENSG00000136932 [Gene_View]  chr9:100666771-100684852 [Contig_View]  C9orf156 [Vega]
Ensembl hg38 (Hinxton)ENSG00000136932 [Gene_View]  chr9:100666771-100684852 [Contig_View]  C9orf156 [Vega]
ICGC DataPortalENSG00000136932
TCGA cBioPortalC9orf156
AceView (NCBI)C9orf156
Genatlas (Paris)C9orf156
WikiGenes51531
SOURCE (Princeton)C9orf156
Genetics Home Reference (NIH)C9orf156
Genomic and cartography
GoldenPath hg19 (UCSC)C9orf156  -     chr9:100666771-100684852 -  9q22.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C9orf156  -     9q22.33   [Description]    (hg38-Dec_2013)
EnsemblC9orf156 - 9q22.33 [CytoView hg19]  C9orf156 - 9q22.33 [CytoView hg38]
Mapping of homologs : NCBIC9orf156 [Mapview hg19]  C9orf156 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF151053 AK000213 AK023069 AK302701 AK309270
RefSeq transcript (Entrez)NM_016481
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929366
Consensus coding sequences : CCDS (NCBI)C9orf156
Cluster EST : UnigeneHs.9196 [ NCBI ]
CGAP (NCI)Hs.9196
Alternative Splicing GalleryENSG00000136932
Gene ExpressionC9orf156 [ NCBI-GEO ]   C9orf156 [ EBI - ARRAY_EXPRESS ]   C9orf156 [ SEEK ]   C9orf156 [ MEM ]
Gene Expression Viewer (FireBrowse)C9orf156 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51531
GTEX Portal (Tissue expression)C9orf156
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BU70   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BU70  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BU70
Splice isoforms : SwissVarQ9BU70
Catalytic activity : Enzyme3.1.2.- [ Enzyme-Expasy ]   3.1.2.-3.1.2.- [ IntEnz-EBI ]   3.1.2.- [ BRENDA ]   3.1.2.- [ KEGG ]   
PhosPhoSitePlusQ9BU70
Domaine pattern : Prosite (Expaxy)TSAA_1 (PS01318)    TSAA_2 (PS51668)   
Domains : Interpro (EBI)TsaA-like    UPF0066    UPF0066_cons_site   
Domain families : Pfam (Sanger)UPF0066 (PF01980)   
Domain families : Pfam (NCBI)pfam01980   
Conserved Domain (NCBI)C9orf156
DMDM Disease mutations51531
Blocks (Seattle)C9orf156
SuperfamilyQ9BU70
Human Protein AtlasENSG00000136932
Peptide AtlasQ9BU70
HPRD12945
IPIIPI00305858   IPI00514281   IPI01015281   IPI00647809   IPI00514120   
Protein Interaction databases
DIP (DOE-UCLA)Q9BU70
IntAct (EBI)Q9BU70
FunCoupENSG00000136932
BioGRIDC9orf156
STRING (EMBL)C9orf156
ZODIACC9orf156
Ontologies - Pathways
QuickGOQ9BU70
Ontology : AmiGOmetabolic process  viral process  hydrolase activity  
Ontology : EGO-EBImetabolic process  viral process  hydrolase activity  
NDEx NetworkC9orf156
Atlas of Cancer Signalling NetworkC9orf156
Wikipedia pathwaysC9orf156
Orthology - Evolution
OrthoDB51531
GeneTree (enSembl)ENSG00000136932
Phylogenetic Trees/Animal Genes : TreeFamC9orf156
HOVERGENQ9BU70
HOGENOMQ9BU70
Homologs : HomoloGeneC9orf156
Homology/Alignments : Family Browser (UCSC)C9orf156
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC9orf156 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C9orf156
dbVarC9orf156
ClinVarC9orf156
1000_GenomesC9orf156 
Exome Variant ServerC9orf156
ExAC (Exome Aggregation Consortium)C9orf156 (select the gene name)
Genetic variants : HAPMAP51531
Genomic Variants (DGV)C9orf156 [DGVbeta]
DECIPHER (Syndromes)9:100666771-100684852  ENSG00000136932
CONAN: Copy Number AnalysisC9orf156 
Mutations
ICGC Data PortalC9orf156 
TCGA Data PortalC9orf156 
Broad Tumor PortalC9orf156
OASIS PortalC9orf156 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC9orf156  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC9orf156
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C9orf156
DgiDB (Drug Gene Interaction Database)C9orf156
DoCM (Curated mutations)C9orf156 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C9orf156 (select a term)
intoGenC9orf156
Cancer3DC9orf156(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC9orf156
Genetic Testing Registry C9orf156
NextProtQ9BU70 [Medical]
TSGene51531
GENETestsC9orf156
Huge Navigator C9orf156 [HugePedia]
snp3D : Map Gene to Disease51531
BioCentury BCIQC9orf156
ClinGenC9orf156
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51531
Chemical/Pharm GKB GenePA134875112
Clinical trialC9orf156
Miscellaneous
canSAR (ICR)C9orf156 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC9orf156
EVEXC9orf156
GoPubMedC9orf156
iHOPC9orf156
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:57:45 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.