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C9orf16 (chromosome 9 open reading frame 16)

Identity

Alias_symbol (synonym)EST00098
FLJ12823
MGC4639
Other alias
HGNC (Hugo) C9orf16
LocusID (NCBI) 79095
Atlas_Id 61311
Location 9q34.11  [Link to chromosome band 9q34]
Location_base_pair Starts at 128160260 and ends at 128163928 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C9orf16   17823
Cards
Entrez_Gene (NCBI)C9orf16  79095  chromosome 9 open reading frame 16
AliasesEST00098
GeneCards (Weizmann)C9orf16
Ensembl hg19 (Hinxton)ENSG00000171159 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171159 [Gene_View]  chr9:128160260-128163928 [Contig_View]  C9orf16 [Vega]
ICGC DataPortalENSG00000171159
TCGA cBioPortalC9orf16
AceView (NCBI)C9orf16
Genatlas (Paris)C9orf16
WikiGenes79095
SOURCE (Princeton)C9orf16
Genetics Home Reference (NIH)C9orf16
Genomic and cartography
GoldenPath hg38 (UCSC)C9orf16  -     chr9:128160260-128163928 +  9q34.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C9orf16  -     9q34.11   [Description]    (hg19-Feb_2009)
EnsemblC9orf16 - 9q34.11 [CytoView hg19]  C9orf16 - 9q34.11 [CytoView hg38]
Mapping of homologs : NCBIC9orf16 [Mapview hg19]  C9orf16 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK022885 AK311245 AK315753 BC001857 BC008887
RefSeq transcript (Entrez)NM_024112
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C9orf16
Cluster EST : UnigeneHs.522412 [ NCBI ]
CGAP (NCI)Hs.522412
Alternative Splicing GalleryENSG00000171159
Gene ExpressionC9orf16 [ NCBI-GEO ]   C9orf16 [ EBI - ARRAY_EXPRESS ]   C9orf16 [ SEEK ]   C9orf16 [ MEM ]
Gene Expression Viewer (FireBrowse)C9orf16 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79095
GTEX Portal (Tissue expression)C9orf16
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BUW7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BUW7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BUW7
Splice isoforms : SwissVarQ9BUW7
PhosPhoSitePlusQ9BUW7
Domains : Interpro (EBI)UPF0184    UPF0184_eukaryota   
Domain families : Pfam (Sanger)UPF0184 (PF03670)   
Domain families : Pfam (NCBI)pfam03670   
Domain structure : Prodom (Prabi Lyon)UPF0184 (PD479232)   
Conserved Domain (NCBI)C9orf16
DMDM Disease mutations79095
Blocks (Seattle)C9orf16
SuperfamilyQ9BUW7
Human Protein AtlasENSG00000171159
Peptide AtlasQ9BUW7
HPRD12946
IPIIPI00012215   IPI00884136   
Protein Interaction databases
DIP (DOE-UCLA)Q9BUW7
IntAct (EBI)Q9BUW7
FunCoupENSG00000171159
BioGRIDC9orf16
STRING (EMBL)C9orf16
ZODIACC9orf16
Ontologies - Pathways
QuickGOQ9BUW7
Ontology : AmiGOmolecular_function  protein binding  cellular_component  biological_process  
Ontology : EGO-EBImolecular_function  protein binding  cellular_component  biological_process  
NDEx NetworkC9orf16
Atlas of Cancer Signalling NetworkC9orf16
Wikipedia pathwaysC9orf16
Orthology - Evolution
OrthoDB79095
GeneTree (enSembl)ENSG00000171159
Phylogenetic Trees/Animal Genes : TreeFamC9orf16
HOVERGENQ9BUW7
HOGENOMQ9BUW7
Homologs : HomoloGeneC9orf16
Homology/Alignments : Family Browser (UCSC)C9orf16
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC9orf16 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C9orf16
dbVarC9orf16
ClinVarC9orf16
1000_GenomesC9orf16 
Exome Variant ServerC9orf16
ExAC (Exome Aggregation Consortium)C9orf16 (select the gene name)
Genetic variants : HAPMAP79095
Genomic Variants (DGV)C9orf16 [DGVbeta]
DECIPHERC9orf16 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC9orf16 
Mutations
ICGC Data PortalC9orf16 
TCGA Data PortalC9orf16 
Broad Tumor PortalC9orf16
OASIS PortalC9orf16 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC9orf16  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC9orf16
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C9orf16
DgiDB (Drug Gene Interaction Database)C9orf16
DoCM (Curated mutations)C9orf16 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C9orf16 (select a term)
intoGenC9orf16
Cancer3DC9orf16(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC9orf16
Genetic Testing Registry C9orf16
NextProtQ9BUW7 [Medical]
TSGene79095
GENETestsC9orf16
Target ValidationC9orf16
Huge Navigator C9orf16 [HugePedia]
snp3D : Map Gene to Disease79095
BioCentury BCIQC9orf16
ClinGenC9orf16
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79095
Chemical/Pharm GKB GenePA25973
Clinical trialC9orf16
Miscellaneous
canSAR (ICR)C9orf16 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC9orf16
EVEXC9orf16
GoPubMedC9orf16
iHOPC9orf16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:03:37 CEST 2017

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