Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C9orf163 (chromosome 9 open reading frame 163)

Identity

Alias_symbol (synonym)FLJ36779
Other alias-
HGNC (Hugo) C9orf163
LocusID (NCBI) 158055
Atlas_Id 61312
Location 9q34.3  [Link to chromosome band 9q34]
Location_base_pair Starts at 139377947 and ends at 139380519 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C9orf163   26718
Cards
Entrez_Gene (NCBI)C9orf163  158055  chromosome 9 open reading frame 163
Aliases
GeneCards (Weizmann)C9orf163
Ensembl hg19 (Hinxton) [Gene_View]  chr9:139377947-139380519 [Contig_View]  C9orf163 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr9:139377947-139380519 [Contig_View]  C9orf163 [Vega]
TCGA cBioPortalC9orf163
AceView (NCBI)C9orf163
Genatlas (Paris)C9orf163
WikiGenes158055
SOURCE (Princeton)C9orf163
Genetics Home Reference (NIH)C9orf163
Genomic and cartography
GoldenPath hg19 (UCSC)C9orf163  -     chr9:139377947-139380519 +  9q34.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C9orf163  -     9q34.3   [Description]    (hg38-Dec_2013)
EnsemblC9orf163 - 9q34.3 [CytoView hg19]  C9orf163 - 9q34.3 [CytoView hg38]
Mapping of homologs : NCBIC9orf163 [Mapview hg19]  C9orf163 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK055336 AK094098 BC036221 BC117152 BC117154
RefSeq transcript (Entrez)NM_152571
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929369
Consensus coding sequences : CCDS (NCBI)C9orf163
Cluster EST : UnigeneHs.212613 [ NCBI ]
CGAP (NCI)Hs.212613
Gene ExpressionC9orf163 [ NCBI-GEO ]   C9orf163 [ EBI - ARRAY_EXPRESS ]   C9orf163 [ SEEK ]   C9orf163 [ MEM ]
Gene Expression Viewer (FireBrowse)C9orf163 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)158055
GTEX Portal (Tissue expression)C9orf163
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N9P6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N9P6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N9P6
Splice isoforms : SwissVarQ8N9P6
PhosPhoSitePlusQ8N9P6
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C9orf163
DMDM Disease mutations158055
Blocks (Seattle)C9orf163
SuperfamilyQ8N9P6
Peptide AtlasQ8N9P6
HPRD08211
IPIIPI00167780   
Protein Interaction databases
DIP (DOE-UCLA)Q8N9P6
IntAct (EBI)Q8N9P6
BioGRIDC9orf163
STRING (EMBL)C9orf163
ZODIACC9orf163
Ontologies - Pathways
QuickGOQ8N9P6
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC9orf163
Atlas of Cancer Signalling NetworkC9orf163
Wikipedia pathwaysC9orf163
Orthology - Evolution
OrthoDB158055
Phylogenetic Trees/Animal Genes : TreeFamC9orf163
HOVERGENQ8N9P6
HOGENOMQ8N9P6
Homologs : HomoloGeneC9orf163
Homology/Alignments : Family Browser (UCSC)C9orf163
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC9orf163 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C9orf163
dbVarC9orf163
ClinVarC9orf163
1000_GenomesC9orf163 
Exome Variant ServerC9orf163
ExAC (Exome Aggregation Consortium)C9orf163 (select the gene name)
Genetic variants : HAPMAP158055
Genomic Variants (DGV)C9orf163 [DGVbeta]
DECIPHER (Syndromes)9:139377947-139380519  
CONAN: Copy Number AnalysisC9orf163 
Mutations
ICGC Data PortalC9orf163 
TCGA Data PortalC9orf163 
Broad Tumor PortalC9orf163
OASIS PortalC9orf163 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC9orf163  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC9orf163
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C9orf163
DgiDB (Drug Gene Interaction Database)C9orf163
DoCM (Curated mutations)C9orf163 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C9orf163 (select a term)
intoGenC9orf163
Cancer3DC9orf163(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC9orf163
Genetic Testing Registry C9orf163
NextProtQ8N9P6 [Medical]
TSGene158055
GENETestsC9orf163
Huge Navigator C9orf163 [HugePedia]
snp3D : Map Gene to Disease158055
BioCentury BCIQC9orf163
ClinGenC9orf163
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD158055
Chemical/Pharm GKB GenePA144596496
Clinical trialC9orf163
Miscellaneous
canSAR (ICR)C9orf163 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC9orf163
EVEXC9orf163
GoPubMedC9orf163
iHOPC9orf163
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:57:46 CET 2017

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