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C9orf170 (chromosome 9 open reading frame 170)

Identity

Alias_symbol (synonym)FLJ45537
Other alias-
HGNC (Hugo) C9orf170
LocusID (NCBI) 401535
Atlas_Id 61313
Location 9q21.33  [Link to chromosome band 9q21]
Location_base_pair Starts at 87148644 and ends at 87159726 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C9orf170   33817
Cards
Entrez_Gene (NCBI)C9orf170  401535  chromosome 9 open reading frame 170
Aliases
GeneCards (Weizmann)C9orf170
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr9:87148644-87159726 [Contig_View]  C9orf170 [Vega]
TCGA cBioPortalC9orf170
AceView (NCBI)C9orf170
Genatlas (Paris)C9orf170
WikiGenes401535
SOURCE (Princeton)C9orf170
Genetics Home Reference (NIH)C9orf170
Genomic and cartography
GoldenPath hg38 (UCSC)C9orf170  -     chr9:87148644-87159726 +  9q21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C9orf170  -     9q21.33   [Description]    (hg19-Feb_2009)
EnsemblC9orf170 - 9q21.33 [CytoView hg19]  C9orf170 - 9q21.33 [CytoView hg38]
Mapping of homologs : NCBIC9orf170 [Mapview hg19]  C9orf170 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK127445 BC132741 BC136791 HQ258059
RefSeq transcript (Entrez)NM_001001709
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C9orf170
Cluster EST : UnigeneHs.657740 [ NCBI ]
CGAP (NCI)Hs.657740
Gene ExpressionC9orf170 [ NCBI-GEO ]   C9orf170 [ EBI - ARRAY_EXPRESS ]   C9orf170 [ SEEK ]   C9orf170 [ MEM ]
Gene Expression Viewer (FireBrowse)C9orf170 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)401535
GTEX Portal (Tissue expression)C9orf170
Protein : pattern, domain, 3D structure
UniProt/SwissProtA2RU37   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA2RU37  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA2RU37
Splice isoforms : SwissVarA2RU37
PhosPhoSitePlusA2RU37
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C9orf170
DMDM Disease mutations401535
Blocks (Seattle)C9orf170
SuperfamilyA2RU37
Peptide AtlasA2RU37
HPRD16988
IPIIPI00418866   
Protein Interaction databases
DIP (DOE-UCLA)A2RU37
IntAct (EBI)A2RU37
BioGRIDC9orf170
STRING (EMBL)C9orf170
ZODIACC9orf170
Ontologies - Pathways
QuickGOA2RU37
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC9orf170
Atlas of Cancer Signalling NetworkC9orf170
Wikipedia pathwaysC9orf170
Orthology - Evolution
OrthoDB401535
Phylogenetic Trees/Animal Genes : TreeFamC9orf170
HOVERGENA2RU37
HOGENOMA2RU37
Homologs : HomoloGeneC9orf170
Homology/Alignments : Family Browser (UCSC)C9orf170
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC9orf170 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C9orf170
dbVarC9orf170
ClinVarC9orf170
1000_GenomesC9orf170 
Exome Variant ServerC9orf170
ExAC (Exome Aggregation Consortium)C9orf170 (select the gene name)
Genetic variants : HAPMAP401535
Genomic Variants (DGV)C9orf170 [DGVbeta]
DECIPHERC9orf170 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC9orf170 
Mutations
ICGC Data PortalC9orf170 
TCGA Data PortalC9orf170 
Broad Tumor PortalC9orf170
OASIS PortalC9orf170 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC9orf170  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC9orf170
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C9orf170
DgiDB (Drug Gene Interaction Database)C9orf170
DoCM (Curated mutations)C9orf170 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C9orf170 (select a term)
intoGenC9orf170
Cancer3DC9orf170(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC9orf170
Genetic Testing Registry C9orf170
NextProtA2RU37 [Medical]
TSGene401535
GENETestsC9orf170
Target ValidationC9orf170
Huge Navigator C9orf170 [HugePedia]
snp3D : Map Gene to Disease401535
BioCentury BCIQC9orf170
ClinGenC9orf170
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD401535
Chemical/Pharm GKB GenePA164717521
Clinical trialC9orf170
Miscellaneous
canSAR (ICR)C9orf170 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC9orf170
EVEXC9orf170
GoPubMedC9orf170
iHOPC9orf170
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:41:43 CEST 2017

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