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C9orf171 (chromosome 9 open reading frame 171)

Identity

Other alias-
HGNC (Hugo) C9orf171
LocusID (NCBI) 389799
Atlas_Id 61314
Location 9q34.13  [Link to chromosome band 9q34]
Location_base_pair Starts at 135285583 and ends at 135448706 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C9orf171   33776
Cards
Entrez_Gene (NCBI)C9orf171  389799  chromosome 9 open reading frame 171
Aliases
GeneCards (Weizmann)C9orf171
Ensembl hg19 (Hinxton)ENSG00000188523 [Gene_View]  chr9:135285583-135448706 [Contig_View]  C9orf171 [Vega]
Ensembl hg38 (Hinxton)ENSG00000188523 [Gene_View]  chr9:135285583-135448706 [Contig_View]  C9orf171 [Vega]
ICGC DataPortalENSG00000188523
TCGA cBioPortalC9orf171
AceView (NCBI)C9orf171
Genatlas (Paris)C9orf171
WikiGenes389799
SOURCE (Princeton)C9orf171
Genetics Home Reference (NIH)C9orf171
Genomic and cartography
GoldenPath hg19 (UCSC)C9orf171  -     chr9:135285583-135448706 +  9q34.13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C9orf171  -     9q34.13   [Description]    (hg38-Dec_2013)
EnsemblC9orf171 - 9q34.13 [CytoView hg19]  C9orf171 - 9q34.13 [CytoView hg38]
Mapping of homologs : NCBIC9orf171 [Mapview hg19]  C9orf171 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK128819 BC118593 BC124555 HY017665
RefSeq transcript (Entrez)NM_001282957 NM_207417
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929367
Consensus coding sequences : CCDS (NCBI)C9orf171
Cluster EST : UnigeneHs.201709 [ NCBI ]
CGAP (NCI)Hs.201709
Alternative Splicing GalleryENSG00000188523
Gene ExpressionC9orf171 [ NCBI-GEO ]   C9orf171 [ EBI - ARRAY_EXPRESS ]   C9orf171 [ SEEK ]   C9orf171 [ MEM ]
Gene Expression Viewer (FireBrowse)C9orf171 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)389799
GTEX Portal (Tissue expression)C9orf171
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZQR2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZQR2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZQR2
Splice isoforms : SwissVarQ6ZQR2
PhosPhoSitePlusQ6ZQR2
Domains : Interpro (EBI)DUF4483   
Domain families : Pfam (Sanger)DUF4483 (PF14825)   
Domain families : Pfam (NCBI)pfam14825   
Conserved Domain (NCBI)C9orf171
DMDM Disease mutations389799
Blocks (Seattle)C9orf171
SuperfamilyQ6ZQR2
Human Protein AtlasENSG00000188523
Peptide AtlasQ6ZQR2
HPRD13522
IPIIPI00410493   IPI00784037   IPI00796320   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZQR2
IntAct (EBI)Q6ZQR2
FunCoupENSG00000188523
BioGRIDC9orf171
STRING (EMBL)C9orf171
ZODIACC9orf171
Ontologies - Pathways
QuickGOQ6ZQR2
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkC9orf171
Atlas of Cancer Signalling NetworkC9orf171
Wikipedia pathwaysC9orf171
Orthology - Evolution
OrthoDB389799
GeneTree (enSembl)ENSG00000188523
Phylogenetic Trees/Animal Genes : TreeFamC9orf171
HOVERGENQ6ZQR2
HOGENOMQ6ZQR2
Homologs : HomoloGeneC9orf171
Homology/Alignments : Family Browser (UCSC)C9orf171
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC9orf171 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C9orf171
dbVarC9orf171
ClinVarC9orf171
1000_GenomesC9orf171 
Exome Variant ServerC9orf171
ExAC (Exome Aggregation Consortium)C9orf171 (select the gene name)
Genetic variants : HAPMAP389799
Genomic Variants (DGV)C9orf171 [DGVbeta]
DECIPHER (Syndromes)9:135285583-135448706  ENSG00000188523
CONAN: Copy Number AnalysisC9orf171 
Mutations
ICGC Data PortalC9orf171 
TCGA Data PortalC9orf171 
Broad Tumor PortalC9orf171
OASIS PortalC9orf171 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC9orf171  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC9orf171
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C9orf171
DgiDB (Drug Gene Interaction Database)C9orf171
DoCM (Curated mutations)C9orf171 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C9orf171 (select a term)
intoGenC9orf171
Cancer3DC9orf171(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC9orf171
Genetic Testing Registry C9orf171
NextProtQ6ZQR2 [Medical]
TSGene389799
GENETestsC9orf171
Huge Navigator C9orf171 [HugePedia]
snp3D : Map Gene to Disease389799
BioCentury BCIQC9orf171
ClinGenC9orf171
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD389799
Chemical/Pharm GKB GenePA164717530
Clinical trialC9orf171
Miscellaneous
canSAR (ICR)C9orf171 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC9orf171
EVEXC9orf171
GoPubMedC9orf171
iHOPC9orf171
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:57:46 CET 2017

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