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C9orf172 (chromosome 9 open reading frame 172)

Identity

Other alias-
HGNC (Hugo) C9orf172
LocusID (NCBI) 389813
Atlas_Id 61315
Location 9q34.3  [Link to chromosome band 9q34]
Location_base_pair Starts at 139738867 and ends at 139741797 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C9orf172   37284
Cards
Entrez_Gene (NCBI)C9orf172  389813  chromosome 9 open reading frame 172
Aliases
GeneCards (Weizmann)C9orf172
Ensembl hg19 (Hinxton) [Gene_View]  chr9:139738867-139741797 [Contig_View]  C9orf172 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr9:139738867-139741797 [Contig_View]  C9orf172 [Vega]
TCGA cBioPortalC9orf172
AceView (NCBI)C9orf172
Genatlas (Paris)C9orf172
WikiGenes389813
SOURCE (Princeton)C9orf172
Genetics Home Reference (NIH)C9orf172
Genomic and cartography
GoldenPath hg19 (UCSC)C9orf172  -     chr9:139738867-139741797 +  9q34.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C9orf172  -     9q34.3   [Description]    (hg38-Dec_2013)
EnsemblC9orf172 - 9q34.3 [CytoView hg19]  C9orf172 - 9q34.3 [CytoView hg38]
Mapping of homologs : NCBIC9orf172 [Mapview hg19]  C9orf172 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001080482
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929369
Consensus coding sequences : CCDS (NCBI)C9orf172
Cluster EST : UnigeneHs.495485 [ NCBI ]
CGAP (NCI)Hs.495485
Gene ExpressionC9orf172 [ NCBI-GEO ]   C9orf172 [ EBI - ARRAY_EXPRESS ]   C9orf172 [ SEEK ]   C9orf172 [ MEM ]
Gene Expression Viewer (FireBrowse)C9orf172 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)389813
GTEX Portal (Tissue expression)C9orf172
Protein : pattern, domain, 3D structure
UniProt/SwissProtC9J069   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtC9J069  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProC9J069
Splice isoforms : SwissVarC9J069
PhosPhoSitePlusC9J069
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C9orf172
DMDM Disease mutations389813
Blocks (Seattle)C9orf172
SuperfamilyC9J069
Peptide AtlasC9J069
IPIIPI00847762   
Protein Interaction databases
DIP (DOE-UCLA)C9J069
IntAct (EBI)C9J069
BioGRIDC9orf172
STRING (EMBL)C9orf172
ZODIACC9orf172
Ontologies - Pathways
QuickGOC9J069
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC9orf172
Atlas of Cancer Signalling NetworkC9orf172
Wikipedia pathwaysC9orf172
Orthology - Evolution
OrthoDB389813
Phylogenetic Trees/Animal Genes : TreeFamC9orf172
HOVERGENC9J069
HOGENOMC9J069
Homologs : HomoloGeneC9orf172
Homology/Alignments : Family Browser (UCSC)C9orf172
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC9orf172 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C9orf172
dbVarC9orf172
ClinVarC9orf172
1000_GenomesC9orf172 
Exome Variant ServerC9orf172
ExAC (Exome Aggregation Consortium)C9orf172 (select the gene name)
Genetic variants : HAPMAP389813
Genomic Variants (DGV)C9orf172 [DGVbeta]
DECIPHER (Syndromes)9:139738867-139741797  
CONAN: Copy Number AnalysisC9orf172 
Mutations
ICGC Data PortalC9orf172 
TCGA Data PortalC9orf172 
Broad Tumor PortalC9orf172
OASIS PortalC9orf172 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC9orf172  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC9orf172
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C9orf172
DgiDB (Drug Gene Interaction Database)C9orf172
DoCM (Curated mutations)C9orf172 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C9orf172 (select a term)
intoGenC9orf172
Cancer3DC9orf172(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC9orf172
Genetic Testing Registry C9orf172
NextProtC9J069 [Medical]
TSGene389813
GENETestsC9orf172
Huge Navigator C9orf172 [HugePedia]
snp3D : Map Gene to Disease389813
BioCentury BCIQC9orf172
ClinGenC9orf172
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD389813
Chemical/Pharm GKB GenePA165585544
Clinical trialC9orf172
Miscellaneous
canSAR (ICR)C9orf172 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineC9orf172
EVEXC9orf172
GoPubMedC9orf172
iHOPC9orf172
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:57:46 CET 2017

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