Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

C9orf173 (chromosome 9 open reading frame 173)

Identity

Other alias-
HGNC (Hugo) C9orf173
LocusID (NCBI) 441476
Atlas_Id 61316
Location 9q34.3  [Link to chromosome band 9q34]
Location_base_pair Starts at 140145713 and ends at 140147935 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C9orf173   37285
Cards
Entrez_Gene (NCBI)C9orf173  441476  chromosome 9 open reading frame 173
Aliases
GeneCards (Weizmann)C9orf173
Ensembl hg19 (Hinxton)ENSG00000197768 [Gene_View]  chr9:140145713-140147935 [Contig_View]  C9orf173 [Vega]
Ensembl hg38 (Hinxton)ENSG00000197768 [Gene_View]  chr9:140145713-140147935 [Contig_View]  C9orf173 [Vega]
ICGC DataPortalENSG00000197768
TCGA cBioPortalC9orf173
AceView (NCBI)C9orf173
Genatlas (Paris)C9orf173
WikiGenes441476
SOURCE (Princeton)C9orf173
Genetics Home Reference (NIH)C9orf173
Genomic and cartography
GoldenPath hg19 (UCSC)C9orf173  -     chr9:140145713-140147935 +  9q34.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C9orf173  -     9q34.3   [Description]    (hg38-Dec_2013)
EnsemblC9orf173 - 9q34.3 [CytoView hg19]  C9orf173 - 9q34.3 [CytoView hg38]
Mapping of homologs : NCBIC9orf173 [Mapview hg19]  C9orf173 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK097565 BC033939 BC050094 BC132726 BC144308
RefSeq transcript (Entrez)NM_001004353 NM_001256699 NM_001256700 NM_001256701
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929369
Consensus coding sequences : CCDS (NCBI)C9orf173
Cluster EST : UnigeneHs.372640 [ NCBI ]
CGAP (NCI)Hs.372640
Alternative Splicing GalleryENSG00000197768
Gene ExpressionC9orf173 [ NCBI-GEO ]   C9orf173 [ EBI - ARRAY_EXPRESS ]   C9orf173 [ SEEK ]   C9orf173 [ MEM ]
Gene Expression Viewer (FireBrowse)C9orf173 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)441476
GTEX Portal (Tissue expression)C9orf173
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N7X2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N7X2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N7X2
Splice isoforms : SwissVarQ8N7X2
PhosPhoSitePlusQ8N7X2
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C9orf173
DMDM Disease mutations441476
Blocks (Seattle)C9orf173
SuperfamilyQ8N7X2
Human Protein AtlasENSG00000197768
Peptide AtlasQ8N7X2
HPRD17408
IPIIPI00384682   IPI00887719   IPI00386129   IPI00940364   
Protein Interaction databases
DIP (DOE-UCLA)Q8N7X2
IntAct (EBI)Q8N7X2
FunCoupENSG00000197768
BioGRIDC9orf173
STRING (EMBL)C9orf173
ZODIACC9orf173
Ontologies - Pathways
QuickGOQ8N7X2
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC9orf173
Atlas of Cancer Signalling NetworkC9orf173
Wikipedia pathwaysC9orf173
Orthology - Evolution
OrthoDB441476
GeneTree (enSembl)ENSG00000197768
Phylogenetic Trees/Animal Genes : TreeFamC9orf173
HOVERGENQ8N7X2
HOGENOMQ8N7X2
Homologs : HomoloGeneC9orf173
Homology/Alignments : Family Browser (UCSC)C9orf173
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC9orf173 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C9orf173
dbVarC9orf173
ClinVarC9orf173
1000_GenomesC9orf173 
Exome Variant ServerC9orf173
ExAC (Exome Aggregation Consortium)C9orf173 (select the gene name)
Genetic variants : HAPMAP441476
Genomic Variants (DGV)C9orf173 [DGVbeta]
DECIPHER (Syndromes)9:140145713-140147935  ENSG00000197768
CONAN: Copy Number AnalysisC9orf173 
Mutations
ICGC Data PortalC9orf173 
TCGA Data PortalC9orf173 
Broad Tumor PortalC9orf173
OASIS PortalC9orf173 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC9orf173  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC9orf173
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C9orf173
DgiDB (Drug Gene Interaction Database)C9orf173
DoCM (Curated mutations)C9orf173 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C9orf173 (select a term)
intoGenC9orf173
Cancer3DC9orf173(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC9orf173
Genetic Testing Registry C9orf173
NextProtQ8N7X2 [Medical]
TSGene441476
GENETestsC9orf173
Huge Navigator C9orf173 [HugePedia]
snp3D : Map Gene to Disease441476
BioCentury BCIQC9orf173
ClinGenC9orf173
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD441476
Chemical/Pharm GKB GenePA165585550
Clinical trialC9orf173
Miscellaneous
canSAR (ICR)C9orf173 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC9orf173
EVEXC9orf173
GoPubMedC9orf173
iHOPC9orf173
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:57:47 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.