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C9orf24 (chromosome 9 open reading frame 24)

Identity

Alias_symbol (synonym)bA573M23.4
NYD-SP22
MGC32921
MGC33614
CBE1
SMRP1
Other alias
HGNC (Hugo) C9orf24
LocusID (NCBI) 84688
Atlas_Id 54185
Location 9p13.3  [Link to chromosome band 9p13]
Location_base_pair Starts at 34379017 and ends at 34381598 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
NFX1 (9p13.3) / C9orf24 (9p13.3)NFX1 9p13.3 / C9orf24 9p13.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C9orf24   19919
Cards
Entrez_Gene (NCBI)C9orf24  84688  chromosome 9 open reading frame 24
AliasesCBE1; NYD-SP22; SMRP1; bA573M23.4
GeneCards (Weizmann)C9orf24
Ensembl hg19 (Hinxton)ENSG00000164972 [Gene_View]  chr9:34379017-34381598 [Contig_View]  C9orf24 [Vega]
Ensembl hg38 (Hinxton)ENSG00000164972 [Gene_View]  chr9:34379017-34381598 [Contig_View]  C9orf24 [Vega]
ICGC DataPortalENSG00000164972
TCGA cBioPortalC9orf24
AceView (NCBI)C9orf24
Genatlas (Paris)C9orf24
WikiGenes84688
SOURCE (Princeton)C9orf24
Genetics Home Reference (NIH)C9orf24
Genomic and cartography
GoldenPath hg19 (UCSC)C9orf24  -     chr9:34379017-34381598 -  9p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C9orf24  -     9p13.3   [Description]    (hg38-Dec_2013)
EnsemblC9orf24 - 9p13.3 [CytoView hg19]  C9orf24 - 9p13.3 [CytoView hg38]
Mapping of homologs : NCBIC9orf24 [Mapview hg19]  C9orf24 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA338648 AF367474 AK058087 AK094751 AK225981
RefSeq transcript (Entrez)NM_001252195 NM_032596 NM_147168 NM_147169
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008413 NW_004929342
Consensus coding sequences : CCDS (NCBI)C9orf24
Cluster EST : UnigeneHs.50334 [ NCBI ]
CGAP (NCI)Hs.50334
Alternative Splicing GalleryENSG00000164972
Gene ExpressionC9orf24 [ NCBI-GEO ]   C9orf24 [ EBI - ARRAY_EXPRESS ]   C9orf24 [ SEEK ]   C9orf24 [ MEM ]
Gene Expression Viewer (FireBrowse)C9orf24 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84688
GTEX Portal (Tissue expression)C9orf24
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NCR6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NCR6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NCR6
Splice isoforms : SwissVarQ8NCR6
PhosPhoSitePlusQ8NCR6
Domains : Interpro (EBI)SMRP1   
Domain families : Pfam (Sanger)SMRP1 (PF15181)   
Domain families : Pfam (NCBI)pfam15181   
Conserved Domain (NCBI)C9orf24
DMDM Disease mutations84688
Blocks (Seattle)C9orf24
SuperfamilyQ8NCR6
Human Protein AtlasENSG00000164972
Peptide AtlasQ8NCR6
HPRD12949
IPIIPI00386022   IPI00384839   IPI00306741   IPI00413608   IPI00515058   IPI00644500   
Protein Interaction databases
DIP (DOE-UCLA)Q8NCR6
IntAct (EBI)Q8NCR6
FunCoupENSG00000164972
BioGRIDC9orf24
STRING (EMBL)C9orf24
ZODIACC9orf24
Ontologies - Pathways
QuickGOQ8NCR6
Ontology : AmiGOmanchette  protein binding  nucleus  spermatogenesis  cell differentiation  alpha-tubulin binding  cellular protein complex assembly  perinuclear region of cytoplasm  
Ontology : EGO-EBImanchette  protein binding  nucleus  spermatogenesis  cell differentiation  alpha-tubulin binding  cellular protein complex assembly  perinuclear region of cytoplasm  
NDEx NetworkC9orf24
Atlas of Cancer Signalling NetworkC9orf24
Wikipedia pathwaysC9orf24
Orthology - Evolution
OrthoDB84688
GeneTree (enSembl)ENSG00000164972
Phylogenetic Trees/Animal Genes : TreeFamC9orf24
HOVERGENQ8NCR6
HOGENOMQ8NCR6
Homologs : HomoloGeneC9orf24
Homology/Alignments : Family Browser (UCSC)C9orf24
Gene fusions - Rearrangements
Fusion : MitelmanNFX1/C9orf24 [9p13.3/9p13.3]  [t(9;9)(p13;p13)]  
Fusion: TCGANFX1 9p13.3 C9orf24 9p13.3 GBM
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC9orf24 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C9orf24
dbVarC9orf24
ClinVarC9orf24
1000_GenomesC9orf24 
Exome Variant ServerC9orf24
ExAC (Exome Aggregation Consortium)C9orf24 (select the gene name)
Genetic variants : HAPMAP84688
Genomic Variants (DGV)C9orf24 [DGVbeta]
DECIPHER (Syndromes)9:34379017-34381598  ENSG00000164972
CONAN: Copy Number AnalysisC9orf24 
Mutations
ICGC Data PortalC9orf24 
TCGA Data PortalC9orf24 
Broad Tumor PortalC9orf24
OASIS PortalC9orf24 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC9orf24  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC9orf24
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C9orf24
DgiDB (Drug Gene Interaction Database)C9orf24
DoCM (Curated mutations)C9orf24 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C9orf24 (select a term)
intoGenC9orf24
Cancer3DC9orf24(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC9orf24
Genetic Testing Registry C9orf24
NextProtQ8NCR6 [Medical]
TSGene84688
GENETestsC9orf24
Huge Navigator C9orf24 [HugePedia]
snp3D : Map Gene to Disease84688
BioCentury BCIQC9orf24
ClinGenC9orf24
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84688
Chemical/Pharm GKB GenePA134950467
Clinical trialC9orf24
Miscellaneous
canSAR (ICR)C9orf24 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC9orf24
EVEXC9orf24
GoPubMedC9orf24
iHOPC9orf24
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 14:54:43 CEST 2017

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