Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C9orf3 (chromosome 9 open reading frame 3)

Identity

Alias_symbol (synonym)C90RF3
FLJ14675
APO
AOPEP
AP-O
Other aliasONPEP
HGNC (Hugo) C9orf3
LocusID (NCBI) 84909
Atlas_Id 61318
Location 9q22.32  [Link to chromosome band 9q22]
Location_base_pair Starts at 94759649 and ends at 95087218 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
C9orf3 (9q22.32) / C9orf3 (9q22.32)C9orf3 (9q22.32) / COPS7A (12p13.31)C9orf3 (9q22.32) / LSS (21q22.3)
C9orf3 (9q22.32) / PTPDC1 (9q22.32)C9orf3 (9q22.32) / RAB35 (12q24.23)CPSF6 (12q15) / C9orf3 (9q22.32)
FANCC (9q22.32) / C9orf3 (9q22.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C9orf3   1361
Cards
Entrez_Gene (NCBI)C9orf3  84909  chromosome 9 open reading frame 3
AliasesAOPEP; AP-O; APO; C90RF3; 
ONPEP
GeneCards (Weizmann)C9orf3
Ensembl hg19 (Hinxton)ENSG00000148120 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000148120 [Gene_View]  chr9:94759649-95087218 [Contig_View]  C9orf3 [Vega]
ICGC DataPortalENSG00000148120
TCGA cBioPortalC9orf3
AceView (NCBI)C9orf3
Genatlas (Paris)C9orf3
WikiGenes84909
SOURCE (Princeton)C9orf3
Genetics Home Reference (NIH)C9orf3
Genomic and cartography
GoldenPath hg38 (UCSC)C9orf3  -     chr9:94759649-95087218 +  9q22.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C9orf3  -     9q22.32   [Description]    (hg19-Feb_2009)
EnsemblC9orf3 - 9q22.32 [CytoView hg19]  C9orf3 - 9q22.32 [CytoView hg38]
Mapping of homologs : NCBIC9orf3 [Mapview hg19]  C9orf3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF043896 AF043897 AI982632 AJ560639 AK027581
RefSeq transcript (Entrez)NM_001193329 NM_001193330 NM_001193331 NM_032823
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C9orf3
Cluster EST : UnigeneHs.675327 [ NCBI ]
CGAP (NCI)Hs.675327
Alternative Splicing GalleryENSG00000148120
Gene ExpressionC9orf3 [ NCBI-GEO ]   C9orf3 [ EBI - ARRAY_EXPRESS ]   C9orf3 [ SEEK ]   C9orf3 [ MEM ]
Gene Expression Viewer (FireBrowse)C9orf3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84909
GTEX Portal (Tissue expression)C9orf3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N6M6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N6M6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N6M6
Splice isoforms : SwissVarQ8N6M6
PhosPhoSitePlusQ8N6M6
Domains : Interpro (EBI)AOPep    ARM-type_fold    Peptidase_M1    Peptidase_M1_C    Peptidase_M1_N   
Domain families : Pfam (Sanger)Leuk-A4-hydro_C (PF09127)    Peptidase_M1 (PF01433)   
Domain families : Pfam (NCBI)pfam09127    pfam01433   
Domain families : Smart (EMBL)Leuk-A4-hydro_C (SM01263)  
Conserved Domain (NCBI)C9orf3
DMDM Disease mutations84909
Blocks (Seattle)C9orf3
SuperfamilyQ8N6M6
Human Protein AtlasENSG00000148120
Peptide AtlasQ8N6M6
HPRD07476
IPIIPI00163493   IPI00171144   IPI00554492   IPI00647187   IPI00909505   IPI00908509   IPI00552364   IPI00187032   IPI00552746   IPI00978523   
Protein Interaction databases
DIP (DOE-UCLA)Q8N6M6
IntAct (EBI)Q8N6M6
FunCoupENSG00000148120
BioGRIDC9orf3
STRING (EMBL)C9orf3
ZODIACC9orf3
Ontologies - Pathways
QuickGOQ8N6M6
Ontology : AmiGOangiotensin maturation  aminopeptidase activity  aminopeptidase activity  nucleolus  cytoplasm  cytosol  proteolysis  metallopeptidase activity  zinc ion binding  peptide binding  peptide catabolic process  metalloaminopeptidase activity  
Ontology : EGO-EBIangiotensin maturation  aminopeptidase activity  aminopeptidase activity  nucleolus  cytoplasm  cytosol  proteolysis  metallopeptidase activity  zinc ion binding  peptide binding  peptide catabolic process  metalloaminopeptidase activity  
NDEx NetworkC9orf3
Atlas of Cancer Signalling NetworkC9orf3
Wikipedia pathwaysC9orf3
Orthology - Evolution
OrthoDB84909
GeneTree (enSembl)ENSG00000148120
Phylogenetic Trees/Animal Genes : TreeFamC9orf3
HOVERGENQ8N6M6
HOGENOMQ8N6M6
Homologs : HomoloGeneC9orf3
Homology/Alignments : Family Browser (UCSC)C9orf3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC9orf3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C9orf3
dbVarC9orf3
ClinVarC9orf3
1000_GenomesC9orf3 
Exome Variant ServerC9orf3
ExAC (Exome Aggregation Consortium)C9orf3 (select the gene name)
Genetic variants : HAPMAP84909
Genomic Variants (DGV)C9orf3 [DGVbeta]
DECIPHERC9orf3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC9orf3 
Mutations
ICGC Data PortalC9orf3 
TCGA Data PortalC9orf3 
Broad Tumor PortalC9orf3
OASIS PortalC9orf3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC9orf3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC9orf3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C9orf3
DgiDB (Drug Gene Interaction Database)C9orf3
DoCM (Curated mutations)C9orf3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C9orf3 (select a term)
intoGenC9orf3
Cancer3DC9orf3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC9orf3
Genetic Testing Registry C9orf3
NextProtQ8N6M6 [Medical]
TSGene84909
GENETestsC9orf3
Target ValidationC9orf3
Huge Navigator C9orf3 [HugePedia]
snp3D : Map Gene to Disease84909
BioCentury BCIQC9orf3
ClinGenC9orf3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84909
Chemical/Pharm GKB GenePA25978
Clinical trialC9orf3
Miscellaneous
canSAR (ICR)C9orf3 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC9orf3
EVEXC9orf3
GoPubMedC9orf3
iHOPC9orf3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:03:39 CEST 2017

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