Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C9orf40 (chromosome 9 open reading frame 40)

Identity

Alias_symbol (synonym)FLJ10110
Other alias-
HGNC (Hugo) C9orf40
LocusID (NCBI) 55071
Atlas_Id 61319
Location 9q21.13  [Link to chromosome band 9q21]
Location_base_pair Starts at 74946583 and ends at 74952886 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C9orf40   23433
Cards
Entrez_Gene (NCBI)C9orf40  55071  chromosome 9 open reading frame 40
Aliases
GeneCards (Weizmann)C9orf40
Ensembl hg19 (Hinxton)ENSG00000135045 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000135045 [Gene_View]  chr9:74946583-74952886 [Contig_View]  C9orf40 [Vega]
ICGC DataPortalENSG00000135045
TCGA cBioPortalC9orf40
AceView (NCBI)C9orf40
Genatlas (Paris)C9orf40
WikiGenes55071
SOURCE (Princeton)C9orf40
Genetics Home Reference (NIH)C9orf40
Genomic and cartography
GoldenPath hg38 (UCSC)C9orf40  -     chr9:74946583-74952886 -  9q21.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C9orf40  -     9q21.13   [Description]    (hg19-Feb_2009)
EnsemblC9orf40 - 9q21.13 [CytoView hg19]  C9orf40 - 9q21.13 [CytoView hg38]
Mapping of homologs : NCBIC9orf40 [Mapview hg19]  C9orf40 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK000972 AK225349 BC039588 BM126413
RefSeq transcript (Entrez)NM_017998
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C9orf40
Cluster EST : UnigeneHs.532296 [ NCBI ]
CGAP (NCI)Hs.532296
Alternative Splicing GalleryENSG00000135045
Gene ExpressionC9orf40 [ NCBI-GEO ]   C9orf40 [ EBI - ARRAY_EXPRESS ]   C9orf40 [ SEEK ]   C9orf40 [ MEM ]
Gene Expression Viewer (FireBrowse)C9orf40 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55071
GTEX Portal (Tissue expression)C9orf40
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IXQ3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IXQ3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IXQ3
Splice isoforms : SwissVarQ8IXQ3
PhosPhoSitePlusQ8IXQ3
Domains : Interpro (EBI)Uncharacterised_C9orf40    WRNPLPNID   
Domain families : Pfam (Sanger)WRNPLPNID (PF15017)   
Domain families : Pfam (NCBI)pfam15017   
Domain structure : Prodom (Prabi Lyon)C9orf40 (PD309264)   
Conserved Domain (NCBI)C9orf40
DMDM Disease mutations55071
Blocks (Seattle)C9orf40
SuperfamilyQ8IXQ3
Human Protein AtlasENSG00000135045
Peptide AtlasQ8IXQ3
HPRD12957
IPIIPI00017504   IPI00977888   
Protein Interaction databases
DIP (DOE-UCLA)Q8IXQ3
IntAct (EBI)Q8IXQ3
FunCoupENSG00000135045
BioGRIDC9orf40
STRING (EMBL)C9orf40
ZODIACC9orf40
Ontologies - Pathways
QuickGOQ8IXQ3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC9orf40
Atlas of Cancer Signalling NetworkC9orf40
Wikipedia pathwaysC9orf40
Orthology - Evolution
OrthoDB55071
GeneTree (enSembl)ENSG00000135045
Phylogenetic Trees/Animal Genes : TreeFamC9orf40
HOVERGENQ8IXQ3
HOGENOMQ8IXQ3
Homologs : HomoloGeneC9orf40
Homology/Alignments : Family Browser (UCSC)C9orf40
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC9orf40 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C9orf40
dbVarC9orf40
ClinVarC9orf40
1000_GenomesC9orf40 
Exome Variant ServerC9orf40
ExAC (Exome Aggregation Consortium)C9orf40 (select the gene name)
Genetic variants : HAPMAP55071
Genomic Variants (DGV)C9orf40 [DGVbeta]
DECIPHERC9orf40 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC9orf40 
Mutations
ICGC Data PortalC9orf40 
TCGA Data PortalC9orf40 
Broad Tumor PortalC9orf40
OASIS PortalC9orf40 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC9orf40  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC9orf40
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C9orf40
DgiDB (Drug Gene Interaction Database)C9orf40
DoCM (Curated mutations)C9orf40 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C9orf40 (select a term)
intoGenC9orf40
Cancer3DC9orf40(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC9orf40
Genetic Testing Registry C9orf40
NextProtQ8IXQ3 [Medical]
TSGene55071
GENETestsC9orf40
Target ValidationC9orf40
Huge Navigator C9orf40 [HugePedia]
snp3D : Map Gene to Disease55071
BioCentury BCIQC9orf40
ClinGenC9orf40
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55071
Chemical/Pharm GKB GenePA134870430
Clinical trialC9orf40
Miscellaneous
canSAR (ICR)C9orf40 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC9orf40
EVEXC9orf40
GoPubMedC9orf40
iHOPC9orf40
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:41:44 CEST 2017

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