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C9orf41 (chromosome 9 open reading frame 41)

Identity

Other alias-
HGNC (Hugo) C9orf41
LocusID (NCBI) 138199
Atlas_Id 61320
Location 9q21.13  [Link to chromosome band 9q21]
Location_base_pair Starts at 77597873 and ends at 77643310 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C9orf41   23435
Cards
Entrez_Gene (NCBI)C9orf41  138199  chromosome 9 open reading frame 41
Aliases
GeneCards (Weizmann)C9orf41
Ensembl hg19 (Hinxton)ENSG00000156017 [Gene_View]  chr9:77597873-77643310 [Contig_View]  C9orf41 [Vega]
Ensembl hg38 (Hinxton)ENSG00000156017 [Gene_View]  chr9:77597873-77643310 [Contig_View]  C9orf41 [Vega]
ICGC DataPortalENSG00000156017
TCGA cBioPortalC9orf41
AceView (NCBI)C9orf41
Genatlas (Paris)C9orf41
WikiGenes138199
SOURCE (Princeton)C9orf41
Genetics Home Reference (NIH)C9orf41
Genomic and cartography
GoldenPath hg19 (UCSC)C9orf41  -     chr9:77597873-77643310 -  9q21.13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C9orf41  -     9q21.13   [Description]    (hg38-Dec_2013)
EnsemblC9orf41 - 9q21.13 [CytoView hg19]  C9orf41 - 9q21.13 [CytoView hg38]
Mapping of homologs : NCBIC9orf41 [Mapview hg19]  C9orf41 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK098661 AK299691 BC034033 BX538061 BX647386
RefSeq transcript (Entrez)NM_152420
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929366
Consensus coding sequences : CCDS (NCBI)C9orf41
Cluster EST : UnigeneHs.567688 [ NCBI ]
CGAP (NCI)Hs.567688
Alternative Splicing GalleryENSG00000156017
Gene ExpressionC9orf41 [ NCBI-GEO ]   C9orf41 [ EBI - ARRAY_EXPRESS ]   C9orf41 [ SEEK ]   C9orf41 [ MEM ]
Gene Expression Viewer (FireBrowse)C9orf41 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)138199
GTEX Portal (Tissue expression)C9orf41
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N4J0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N4J0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N4J0
Splice isoforms : SwissVarQ8N4J0
PhosPhoSitePlusQ8N4J0
Domains : Interpro (EBI)N2227    SAM-dependent_MTases   
Domain families : Pfam (Sanger)N2227 (PF07942)   
Domain families : Pfam (NCBI)pfam07942   
Conserved Domain (NCBI)C9orf41
DMDM Disease mutations138199
Blocks (Seattle)C9orf41
SuperfamilyQ8N4J0
Human Protein AtlasENSG00000156017
Peptide AtlasQ8N4J0
HPRD12958
IPIIPI00175028   IPI01009171   IPI00514721   IPI00515112   
Protein Interaction databases
DIP (DOE-UCLA)Q8N4J0
IntAct (EBI)Q8N4J0
FunCoupENSG00000156017
BioGRIDC9orf41
STRING (EMBL)C9orf41
ZODIACC9orf41
Ontologies - Pathways
QuickGOQ8N4J0
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC9orf41
Atlas of Cancer Signalling NetworkC9orf41
Wikipedia pathwaysC9orf41
Orthology - Evolution
OrthoDB138199
GeneTree (enSembl)ENSG00000156017
Phylogenetic Trees/Animal Genes : TreeFamC9orf41
HOVERGENQ8N4J0
HOGENOMQ8N4J0
Homologs : HomoloGeneC9orf41
Homology/Alignments : Family Browser (UCSC)C9orf41
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC9orf41 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C9orf41
dbVarC9orf41
ClinVarC9orf41
1000_GenomesC9orf41 
Exome Variant ServerC9orf41
ExAC (Exome Aggregation Consortium)C9orf41 (select the gene name)
Genetic variants : HAPMAP138199
Genomic Variants (DGV)C9orf41 [DGVbeta]
DECIPHER (Syndromes)9:77597873-77643310  ENSG00000156017
CONAN: Copy Number AnalysisC9orf41 
Mutations
ICGC Data PortalC9orf41 
TCGA Data PortalC9orf41 
Broad Tumor PortalC9orf41
OASIS PortalC9orf41 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC9orf41  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC9orf41
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C9orf41
DgiDB (Drug Gene Interaction Database)C9orf41
DoCM (Curated mutations)C9orf41 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C9orf41 (select a term)
intoGenC9orf41
Cancer3DC9orf41(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC9orf41
Genetic Testing Registry C9orf41
NextProtQ8N4J0 [Medical]
TSGene138199
GENETestsC9orf41
Huge Navigator C9orf41 [HugePedia]
snp3D : Map Gene to Disease138199
BioCentury BCIQC9orf41
ClinGenC9orf41
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD138199
Chemical/Pharm GKB GenePA134929393
Clinical trialC9orf41
Miscellaneous
canSAR (ICR)C9orf41 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC9orf41
EVEXC9orf41
GoPubMedC9orf41
iHOPC9orf41
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:57:47 CET 2017

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