Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C9orf47 (chromosome 9 open reading frame 47)

Identity

Alias_namesC9orf108
chromosome 9 open reading frame 108
Alias_symbol (synonym)FLJ37523
bA791O21.3
Other alias
HGNC (Hugo) C9orf47
LocusID (NCBI) 286223
Atlas_Id 61323
Location 9q22.1  [Link to chromosome band 9q22]
Location_base_pair Starts at 88990863 and ends at 88996142 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C9orf47   23669
Cards
Entrez_Gene (NCBI)C9orf47  286223  chromosome 9 open reading frame 47
AliasesC9orf108; bA791O21.3
GeneCards (Weizmann)C9orf47
Ensembl hg19 (Hinxton)ENSG00000186354 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186354 [Gene_View]  chr9:88990863-88996142 [Contig_View]  C9orf47 [Vega]
ICGC DataPortalENSG00000186354
TCGA cBioPortalC9orf47
AceView (NCBI)C9orf47
Genatlas (Paris)C9orf47
WikiGenes286223
SOURCE (Princeton)C9orf47
Genetics Home Reference (NIH)C9orf47
Genomic and cartography
GoldenPath hg38 (UCSC)C9orf47  -     chr9:88990863-88996142 +  9q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C9orf47  -     9q22.1   [Description]    (hg19-Feb_2009)
EnsemblC9orf47 - 9q22.1 [CytoView hg19]  C9orf47 - 9q22.1 [CytoView hg38]
Mapping of homologs : NCBIC9orf47 [Mapview hg19]  C9orf47 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK094842 AK127854 AK130650 AL831887 AY333281
RefSeq transcript (Entrez)NM_001001938 NM_001142413
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C9orf47
Cluster EST : UnigeneHs.585118 [ NCBI ]
CGAP (NCI)Hs.585118
Alternative Splicing GalleryENSG00000186354
Gene ExpressionC9orf47 [ NCBI-GEO ]   C9orf47 [ EBI - ARRAY_EXPRESS ]   C9orf47 [ SEEK ]   C9orf47 [ MEM ]
Gene Expression Viewer (FireBrowse)C9orf47 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)286223
GTEX Portal (Tissue expression)C9orf47
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZRZ4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZRZ4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZRZ4
Splice isoforms : SwissVarQ6ZRZ4
PhosPhoSitePlusQ6ZRZ4
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C9orf47
DMDM Disease mutations286223
Blocks (Seattle)C9orf47
SuperfamilyQ6ZRZ4
Human Protein AtlasENSG00000186354
Peptide AtlasQ6ZRZ4
HPRD12962
IPIIPI00479251   IPI00552306   IPI00514810   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZRZ4
IntAct (EBI)Q6ZRZ4
FunCoupENSG00000186354
BioGRIDC9orf47
STRING (EMBL)C9orf47
ZODIACC9orf47
Ontologies - Pathways
QuickGOQ6ZRZ4
Ontology : AmiGOextracellular region  
Ontology : EGO-EBIextracellular region  
NDEx NetworkC9orf47
Atlas of Cancer Signalling NetworkC9orf47
Wikipedia pathwaysC9orf47
Orthology - Evolution
OrthoDB286223
GeneTree (enSembl)ENSG00000186354
Phylogenetic Trees/Animal Genes : TreeFamC9orf47
HOVERGENQ6ZRZ4
HOGENOMQ6ZRZ4
Homologs : HomoloGeneC9orf47
Homology/Alignments : Family Browser (UCSC)C9orf47
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC9orf47 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C9orf47
dbVarC9orf47
ClinVarC9orf47
1000_GenomesC9orf47 
Exome Variant ServerC9orf47
ExAC (Exome Aggregation Consortium)C9orf47 (select the gene name)
Genetic variants : HAPMAP286223
Genomic Variants (DGV)C9orf47 [DGVbeta]
DECIPHERC9orf47 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC9orf47 
Mutations
ICGC Data PortalC9orf47 
TCGA Data PortalC9orf47 
Broad Tumor PortalC9orf47
OASIS PortalC9orf47 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC9orf47  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC9orf47
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C9orf47
DgiDB (Drug Gene Interaction Database)C9orf47
DoCM (Curated mutations)C9orf47 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C9orf47 (select a term)
intoGenC9orf47
Cancer3DC9orf47(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC9orf47
Genetic Testing Registry C9orf47
NextProtQ6ZRZ4 [Medical]
TSGene286223
GENETestsC9orf47
Target ValidationC9orf47
Huge Navigator C9orf47 [HugePedia]
snp3D : Map Gene to Disease286223
BioCentury BCIQC9orf47
ClinGenC9orf47
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD286223
Chemical/Pharm GKB GenePA134983814
Clinical trialC9orf47
Miscellaneous
canSAR (ICR)C9orf47 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC9orf47
EVEXC9orf47
GoPubMedC9orf47
iHOPC9orf47
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 1 16:11:19 CEST 2017

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