Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C9orf57 (chromosome 9 open reading frame 57)

Identity

Other alias-
HGNC (Hugo) C9orf57
LocusID (NCBI) 138240
Atlas_Id 61325
Location 9q21.13  [Link to chromosome band 9q21]
Location_base_pair Starts at 74666297 and ends at 74675521 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C9orf57   27037
Cards
Entrez_Gene (NCBI)C9orf57  138240  chromosome 9 open reading frame 57
Aliases
GeneCards (Weizmann)C9orf57
Ensembl hg19 (Hinxton)ENSG00000204669 [Gene_View]  chr9:74666297-74675521 [Contig_View]  C9orf57 [Vega]
Ensembl hg38 (Hinxton)ENSG00000204669 [Gene_View]  chr9:74666297-74675521 [Contig_View]  C9orf57 [Vega]
ICGC DataPortalENSG00000204669
TCGA cBioPortalC9orf57
AceView (NCBI)C9orf57
Genatlas (Paris)C9orf57
WikiGenes138240
SOURCE (Princeton)C9orf57
Genetics Home Reference (NIH)C9orf57
Genomic and cartography
GoldenPath hg19 (UCSC)C9orf57  -     chr9:74666297-74675521 -  9q21.13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C9orf57  -     9q21.13   [Description]    (hg38-Dec_2013)
EnsemblC9orf57 - 9q21.13 [CytoView hg19]  C9orf57 - 9q21.13 [CytoView hg38]
Mapping of homologs : NCBIC9orf57 [Mapview hg19]  C9orf57 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC036255 BC044620 BC053956 BC130404 BC144273
RefSeq transcript (Entrez)NM_001128618
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929366
Consensus coding sequences : CCDS (NCBI)C9orf57
Cluster EST : UnigeneHs.371235 [ NCBI ]
CGAP (NCI)Hs.371235
Alternative Splicing GalleryENSG00000204669
Gene ExpressionC9orf57 [ NCBI-GEO ]   C9orf57 [ EBI - ARRAY_EXPRESS ]   C9orf57 [ SEEK ]   C9orf57 [ MEM ]
Gene Expression Viewer (FireBrowse)C9orf57 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)138240
GTEX Portal (Tissue expression)C9orf57
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5W0N0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5W0N0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5W0N0
Splice isoforms : SwissVarQ5W0N0
PhosPhoSitePlusQ5W0N0
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C9orf57
DMDM Disease mutations138240
Blocks (Seattle)C9orf57
SuperfamilyQ5W0N0
Human Protein AtlasENSG00000204669
Peptide AtlasQ5W0N0
IPIIPI00048539   IPI00896456   
Protein Interaction databases
DIP (DOE-UCLA)Q5W0N0
IntAct (EBI)Q5W0N0
FunCoupENSG00000204669
BioGRIDC9orf57
STRING (EMBL)C9orf57
ZODIACC9orf57
Ontologies - Pathways
QuickGOQ5W0N0
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkC9orf57
Atlas of Cancer Signalling NetworkC9orf57
Wikipedia pathwaysC9orf57
Orthology - Evolution
OrthoDB138240
GeneTree (enSembl)ENSG00000204669
Phylogenetic Trees/Animal Genes : TreeFamC9orf57
HOVERGENQ5W0N0
HOGENOMQ5W0N0
Homologs : HomoloGeneC9orf57
Homology/Alignments : Family Browser (UCSC)C9orf57
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC9orf57 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C9orf57
dbVarC9orf57
ClinVarC9orf57
1000_GenomesC9orf57 
Exome Variant ServerC9orf57
ExAC (Exome Aggregation Consortium)C9orf57 (select the gene name)
Genetic variants : HAPMAP138240
Genomic Variants (DGV)C9orf57 [DGVbeta]
DECIPHER (Syndromes)9:74666297-74675521  ENSG00000204669
CONAN: Copy Number AnalysisC9orf57 
Mutations
ICGC Data PortalC9orf57 
TCGA Data PortalC9orf57 
Broad Tumor PortalC9orf57
OASIS PortalC9orf57 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC9orf57  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC9orf57
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C9orf57
DgiDB (Drug Gene Interaction Database)C9orf57
DoCM (Curated mutations)C9orf57 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C9orf57 (select a term)
intoGenC9orf57
Cancer3DC9orf57(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC9orf57
Genetic Testing Registry C9orf57
NextProtQ5W0N0 [Medical]
TSGene138240
GENETestsC9orf57
Huge Navigator C9orf57 [HugePedia]
snp3D : Map Gene to Disease138240
BioCentury BCIQC9orf57
ClinGenC9orf57
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD138240
Chemical/Pharm GKB GenePA134955143
Clinical trialC9orf57
Miscellaneous
canSAR (ICR)C9orf57 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC9orf57
EVEXC9orf57
GoPubMedC9orf57
iHOPC9orf57
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:57:48 CET 2017

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