Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C9orf62 (chromosome 9 open reading frame 62)

Identity

Alias_symbol (synonym)MGC35463
Other alias-
HGNC (Hugo) C9orf62
LocusID (NCBI) 157927
Atlas_Id 61326
Location 9q34.3  [Link to chromosome band 9q34]
Location_base_pair Starts at 138235095 and ends at 138238404 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C9orf62   28581
Cards
Entrez_Gene (NCBI)C9orf62  157927  chromosome 9 open reading frame 62
Aliases
GeneCards (Weizmann)C9orf62
Ensembl hg19 (Hinxton) [Gene_View]  chr9:138235095-138238404 [Contig_View]  C9orf62 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr9:138235095-138238404 [Contig_View]  C9orf62 [Vega]
TCGA cBioPortalC9orf62
AceView (NCBI)C9orf62
Genatlas (Paris)C9orf62
WikiGenes157927
SOURCE (Princeton)C9orf62
Genetics Home Reference (NIH)C9orf62
Genomic and cartography
GoldenPath hg19 (UCSC)C9orf62  -     chr9:138235095-138238404 +  9q34.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C9orf62  -     9q34.3   [Description]    (hg38-Dec_2013)
EnsemblC9orf62 - 9q34.3 [CytoView hg19]  C9orf62 - 9q34.3 [CytoView hg38]
Mapping of homologs : NCBIC9orf62 [Mapview hg19]  C9orf62 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC034752 LN608317
RefSeq transcript (Entrez)NM_173520
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929368
Consensus coding sequences : CCDS (NCBI)C9orf62
Cluster EST : UnigeneHs.559511 [ NCBI ]
CGAP (NCI)Hs.559511
Gene ExpressionC9orf62 [ NCBI-GEO ]   C9orf62 [ EBI - ARRAY_EXPRESS ]   C9orf62 [ SEEK ]   C9orf62 [ MEM ]
Gene Expression Viewer (FireBrowse)C9orf62 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)157927
GTEX Portal (Tissue expression)C9orf62
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N4C0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N4C0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N4C0
Splice isoforms : SwissVarQ8N4C0
PhosPhoSitePlusQ8N4C0
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C9orf62
DMDM Disease mutations157927
Blocks (Seattle)C9orf62
SuperfamilyQ8N4C0
Peptide AtlasQ8N4C0
IPIIPI00166677   
Protein Interaction databases
DIP (DOE-UCLA)Q8N4C0
IntAct (EBI)Q8N4C0
BioGRIDC9orf62
STRING (EMBL)C9orf62
ZODIACC9orf62
Ontologies - Pathways
QuickGOQ8N4C0
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC9orf62
Atlas of Cancer Signalling NetworkC9orf62
Wikipedia pathwaysC9orf62
Orthology - Evolution
OrthoDB157927
Phylogenetic Trees/Animal Genes : TreeFamC9orf62
HOVERGENQ8N4C0
HOGENOMQ8N4C0
Homologs : HomoloGeneC9orf62
Homology/Alignments : Family Browser (UCSC)C9orf62
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC9orf62 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C9orf62
dbVarC9orf62
ClinVarC9orf62
1000_GenomesC9orf62 
Exome Variant ServerC9orf62
ExAC (Exome Aggregation Consortium)C9orf62 (select the gene name)
Genetic variants : HAPMAP157927
Genomic Variants (DGV)C9orf62 [DGVbeta]
DECIPHER (Syndromes)9:138235095-138238404  
CONAN: Copy Number AnalysisC9orf62 
Mutations
ICGC Data PortalC9orf62 
TCGA Data PortalC9orf62 
Broad Tumor PortalC9orf62
OASIS PortalC9orf62 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC9orf62  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC9orf62
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C9orf62
DgiDB (Drug Gene Interaction Database)C9orf62
DoCM (Curated mutations)C9orf62 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C9orf62 (select a term)
intoGenC9orf62
Cancer3DC9orf62(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC9orf62
Genetic Testing Registry C9orf62
NextProtQ8N4C0 [Medical]
TSGene157927
GENETestsC9orf62
Huge Navigator C9orf62 [HugePedia]
snp3D : Map Gene to Disease157927
BioCentury BCIQC9orf62
ClinGenC9orf62
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD157927
Chemical/Pharm GKB GenePA134891837
Clinical trialC9orf62
Miscellaneous
canSAR (ICR)C9orf62 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC9orf62
EVEXC9orf62
GoPubMedC9orf62
iHOPC9orf62
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:57:49 CET 2017

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