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C9orf64 (chromosome 9 open reading frame 64)

Identity

Alias_symbol (synonym)MGC10999
Other alias-
HGNC (Hugo) C9orf64
LocusID (NCBI) 84267
Atlas_Id 61327
Location 9q21.32  [Link to chromosome band 9q21]
Location_base_pair Starts at 83938312 and ends at 83956986 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GNAQ (9q21.2) / C9orf64 (9q21.32)UBR2 (6p21.1) / C9orf64 (9q21.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C9orf64   28144
Cards
Entrez_Gene (NCBI)C9orf64  84267  chromosome 9 open reading frame 64
Aliases
GeneCards (Weizmann)C9orf64
Ensembl hg19 (Hinxton)ENSG00000165118 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165118 [Gene_View]  chr9:83938312-83956986 [Contig_View]  C9orf64 [Vega]
ICGC DataPortalENSG00000165118
TCGA cBioPortalC9orf64
AceView (NCBI)C9orf64
Genatlas (Paris)C9orf64
WikiGenes84267
SOURCE (Princeton)C9orf64
Genetics Home Reference (NIH)C9orf64
Genomic and cartography
GoldenPath hg38 (UCSC)C9orf64  -     chr9:83938312-83956986 -  9q21.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C9orf64  -     9q21.32   [Description]    (hg19-Feb_2009)
EnsemblC9orf64 - 9q21.32 [CytoView hg19]  C9orf64 - 9q21.32 [CytoView hg38]
Mapping of homologs : NCBIC9orf64 [Mapview hg19]  C9orf64 [Mapview hg38]
OMIM611342   
Gene and transcription
Genbank (Entrez)AK090882 BC004407 BC137461 BC137462 BG709062
RefSeq transcript (Entrez)NM_001317997 NM_032307
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C9orf64
Cluster EST : UnigeneHs.208914 [ NCBI ]
CGAP (NCI)Hs.208914
Alternative Splicing GalleryENSG00000165118
Gene ExpressionC9orf64 [ NCBI-GEO ]   C9orf64 [ EBI - ARRAY_EXPRESS ]   C9orf64 [ SEEK ]   C9orf64 [ MEM ]
Gene Expression Viewer (FireBrowse)C9orf64 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84267
GTEX Portal (Tissue expression)C9orf64
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T6V5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T6V5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T6V5
Splice isoforms : SwissVarQ5T6V5
PhosPhoSitePlusQ5T6V5
Domains : Interpro (EBI)Q_salvage   
Domain families : Pfam (Sanger)Q_salvage (PF10343)   
Domain families : Pfam (NCBI)pfam10343   
Conserved Domain (NCBI)C9orf64
DMDM Disease mutations84267
Blocks (Seattle)C9orf64
SuperfamilyQ5T6V5
Human Protein AtlasENSG00000165118
Peptide AtlasQ5T6V5
HPRD12969
IPIIPI00170972   IPI00647890   IPI00643582   
Protein Interaction databases
DIP (DOE-UCLA)Q5T6V5
IntAct (EBI)Q5T6V5
FunCoupENSG00000165118
BioGRIDC9orf64
STRING (EMBL)C9orf64
ZODIACC9orf64
Ontologies - Pathways
QuickGOQ5T6V5
Ontology : AmiGOmolecular_function  cellular_component  tRNA modification  biological_process  
Ontology : EGO-EBImolecular_function  cellular_component  tRNA modification  biological_process  
NDEx NetworkC9orf64
Atlas of Cancer Signalling NetworkC9orf64
Wikipedia pathwaysC9orf64
Orthology - Evolution
OrthoDB84267
GeneTree (enSembl)ENSG00000165118
Phylogenetic Trees/Animal Genes : TreeFamC9orf64
HOVERGENQ5T6V5
HOGENOMQ5T6V5
Homologs : HomoloGeneC9orf64
Homology/Alignments : Family Browser (UCSC)C9orf64
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC9orf64 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C9orf64
dbVarC9orf64
ClinVarC9orf64
1000_GenomesC9orf64 
Exome Variant ServerC9orf64
ExAC (Exome Aggregation Consortium)C9orf64 (select the gene name)
Genetic variants : HAPMAP84267
Genomic Variants (DGV)C9orf64 [DGVbeta]
DECIPHERC9orf64 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC9orf64 
Mutations
ICGC Data PortalC9orf64 
TCGA Data PortalC9orf64 
Broad Tumor PortalC9orf64
OASIS PortalC9orf64 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC9orf64  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC9orf64
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C9orf64
DgiDB (Drug Gene Interaction Database)C9orf64
DoCM (Curated mutations)C9orf64 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C9orf64 (select a term)
intoGenC9orf64
Cancer3DC9orf64(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611342   
Orphanet
MedgenC9orf64
Genetic Testing Registry C9orf64
NextProtQ5T6V5 [Medical]
TSGene84267
GENETestsC9orf64
Target ValidationC9orf64
Huge Navigator C9orf64 [HugePedia]
snp3D : Map Gene to Disease84267
BioCentury BCIQC9orf64
ClinGenC9orf64
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84267
Chemical/Pharm GKB GenePA134865965
Clinical trialC9orf64
Miscellaneous
canSAR (ICR)C9orf64 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC9orf64
EVEXC9orf64
GoPubMedC9orf64
iHOPC9orf64
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:41:46 CEST 2017

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