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C9orf66 (chromosome 9 open reading frame 66)

Identity

Alias_symbol (synonym)FLJ31158
Other alias-
HGNC (Hugo) C9orf66
LocusID (NCBI) 157983
Atlas_Id 61328
Location 9p24.3  [Link to chromosome band 9p24]
Location_base_pair Starts at 213108 and ends at 215893 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C9orf66   26436
Cards
Entrez_Gene (NCBI)C9orf66  157983  chromosome 9 open reading frame 66
Aliases
GeneCards (Weizmann)C9orf66
Ensembl hg19 (Hinxton)ENSG00000183784 [Gene_View]  chr9:213108-215893 [Contig_View]  C9orf66 [Vega]
Ensembl hg38 (Hinxton)ENSG00000183784 [Gene_View]  chr9:213108-215893 [Contig_View]  C9orf66 [Vega]
ICGC DataPortalENSG00000183784
TCGA cBioPortalC9orf66
AceView (NCBI)C9orf66
Genatlas (Paris)C9orf66
WikiGenes157983
SOURCE (Princeton)C9orf66
Genetics Home Reference (NIH)C9orf66
Genomic and cartography
GoldenPath hg19 (UCSC)C9orf66  -     chr9:213108-215893 -  9p24.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C9orf66  -     9p24.3   [Description]    (hg38-Dec_2013)
EnsemblC9orf66 - 9p24.3 [CytoView hg19]  C9orf66 - 9p24.3 [CytoView hg38]
Mapping of homologs : NCBIC9orf66 [Mapview hg19]  C9orf66 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK055720 BC111423
RefSeq transcript (Entrez)NM_152569
RefSeq genomic (Entrez)NC_000009 NC_018920 NG_017007 NT_008413 NW_004929342
Consensus coding sequences : CCDS (NCBI)C9orf66
Cluster EST : UnigeneHs.190877 [ NCBI ]
CGAP (NCI)Hs.190877
Alternative Splicing GalleryENSG00000183784
Gene ExpressionC9orf66 [ NCBI-GEO ]   C9orf66 [ EBI - ARRAY_EXPRESS ]   C9orf66 [ SEEK ]   C9orf66 [ MEM ]
Gene Expression Viewer (FireBrowse)C9orf66 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)157983
GTEX Portal (Tissue expression)C9orf66
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T8R8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T8R8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T8R8
Splice isoforms : SwissVarQ5T8R8
PhosPhoSitePlusQ5T8R8
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C9orf66
DMDM Disease mutations157983
Blocks (Seattle)C9orf66
SuperfamilyQ5T8R8
Human Protein AtlasENSG00000183784
Peptide AtlasQ5T8R8
HPRD12971
IPIIPI00043562   
Protein Interaction databases
DIP (DOE-UCLA)Q5T8R8
IntAct (EBI)Q5T8R8
FunCoupENSG00000183784
BioGRIDC9orf66
STRING (EMBL)C9orf66
ZODIACC9orf66
Ontologies - Pathways
QuickGOQ5T8R8
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC9orf66
Atlas of Cancer Signalling NetworkC9orf66
Wikipedia pathwaysC9orf66
Orthology - Evolution
OrthoDB157983
GeneTree (enSembl)ENSG00000183784
Phylogenetic Trees/Animal Genes : TreeFamC9orf66
HOVERGENQ5T8R8
HOGENOMQ5T8R8
Homologs : HomoloGeneC9orf66
Homology/Alignments : Family Browser (UCSC)C9orf66
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC9orf66 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C9orf66
dbVarC9orf66
ClinVarC9orf66
1000_GenomesC9orf66 
Exome Variant ServerC9orf66
ExAC (Exome Aggregation Consortium)C9orf66 (select the gene name)
Genetic variants : HAPMAP157983
Genomic Variants (DGV)C9orf66 [DGVbeta]
DECIPHER (Syndromes)9:213108-215893  ENSG00000183784
CONAN: Copy Number AnalysisC9orf66 
Mutations
ICGC Data PortalC9orf66 
TCGA Data PortalC9orf66 
Broad Tumor PortalC9orf66
OASIS PortalC9orf66 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC9orf66  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC9orf66
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C9orf66
DgiDB (Drug Gene Interaction Database)C9orf66
DoCM (Curated mutations)C9orf66 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C9orf66 (select a term)
intoGenC9orf66
Cancer3DC9orf66(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC9orf66
Genetic Testing Registry C9orf66
NextProtQ5T8R8 [Medical]
TSGene157983
GENETestsC9orf66
Huge Navigator C9orf66 [HugePedia]
snp3D : Map Gene to Disease157983
BioCentury BCIQC9orf66
ClinGenC9orf66
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD157983
Chemical/Pharm GKB GenePA134953147
Clinical trialC9orf66
Miscellaneous
canSAR (ICR)C9orf66 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC9orf66
EVEXC9orf66
GoPubMedC9orf66
iHOPC9orf66
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:57:49 CET 2017

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