Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C9orf78 (chromosome 9 open reading frame 78)

Identity

Other namesHCA59
HSPC220
bA409K20.3
HGNC (Hugo) C9orf78
LocusID (NCBI) 51759
Location 9q34.11
Location_base_pair Starts at 132589564 and ends at 132597572 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)C9orf78   24932
Cards
Entrez_Gene (NCBI)C9orf78  51759  chromosome 9 open reading frame 78
GeneCards (Weizmann)C9orf78
Ensembl (Hinxton)ENSG00000136819 [Gene_View]  chr9:132589564-132597572 [Contig_View]  C9orf78 [Vega]
ICGC DataPortalENSG00000136819
cBioPortalC9orf78
AceView (NCBI)C9orf78
Genatlas (Paris)C9orf78
WikiGenes51759
SOURCE (Princeton)NM_016520
Genomic and cartography
GoldenPath (UCSC)C9orf78  -  9q34.11   chr9:132589564-132597572 -  9q34.11   [Description]    (hg19-Feb_2009)
EnsemblC9orf78 - 9q34.11 [CytoView]
Mapping of homologs : NCBIC9orf78 [Mapview]
Gene and transcription
Genbank (Entrez)AF151054 AF218421 AK057004 AK097577 AL137549
RefSeq transcript (Entrez)NM_016520
RefSeq genomic (Entrez)AC_000141 NC_000009 NC_018920 NT_008470 NW_001839239 NW_004929366
Consensus coding sequences : CCDS (NCBI)C9orf78
Cluster EST : UnigeneHs.278429 [ NCBI ]
CGAP (NCI)Hs.278429
Alternative Splicing : Fast-db (Paris)GSHG0031207
Alternative Splicing GalleryENSG00000136819
Gene ExpressionC9orf78 [ NCBI-GEO ]     C9orf78 [ SEEK ]   C9orf78 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NZ63 (Uniprot)
NextProtQ9NZ63  [Medical]
With graphics : InterProQ9NZ63
Splice isoforms : SwissVarQ9NZ63 (Swissvar)
Domains : Interpro (EBI)Hep_59 [organisation]  
Related proteins : CluSTrQ9NZ63
Domain families : Pfam (Sanger)Hep_59 (PF07052)   
Domain families : Pfam (NCBI)pfam07052   
DMDM Disease mutations51759
Blocks (Seattle)Q9NZ63
Human Protein AtlasENSG00000136819 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasQ9NZ63
HPRD10803
IPIIPI00550191   IPI00433576   IPI00844166   
Protein Interaction databases
DIP (DOE-UCLA)Q9NZ63
IntAct (EBI)Q9NZ63
FunCoupENSG00000136819
BioGRIDC9orf78
InParanoidQ9NZ63
Interologous Interaction database Q9NZ63
IntegromeDBC9orf78
STRING (EMBL)C9orf78
Ontologies - Pathways
Ontology : AmiGOnucleus  nucleolus  cytoplasm  
Ontology : EGO-EBInucleus  nucleolus  cytoplasm  
Protein Interaction DatabaseC9orf78
Wikipedia pathwaysC9orf78
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)C9orf78
snp3D : Map Gene to Disease51759
SNP (GeneSNP Utah)C9orf78
SNP : HGBaseC9orf78
Genetic variants : HAPMAPC9orf78
Exome VariantC9orf78
1000_GenomesC9orf78 
ICGC programENSG00000136819 
Somatic Mutations in Cancer : COSMICC9orf78 
CONAN: Copy Number AnalysisC9orf78 
Mutations and Diseases : HGMDC9orf78
Genomic VariantsC9orf78  C9orf78 [DGVbeta]
dbVarC9orf78
ClinVarC9orf78
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM
MedgenC9orf78
GENETestsC9orf78
Disease Genetic AssociationC9orf78
Huge Navigator C9orf78 [HugePedia]  C9orf78 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneC9orf78
Homology/Alignments : Family Browser (UCSC)C9orf78
Phylogenetic Trees/Animal Genes : TreeFamC9orf78
Chemical/Protein Interactions : CTD51759
Chemical/Pharm GKB GenePA134929438
Clinical trialC9orf78
Cancer Resource (Charite)ENSG00000136819
Other databases
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
CoreMineC9orf78
iHOPC9orf78
OncoSearchC9orf78
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jul 30 13:45:53 CEST 2014

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