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C9orf84 (chromosome 9 open reading frame 84)

Identity

Alias_symbol (synonym)FLJ32779
Other alias-
HGNC (Hugo) C9orf84
LocusID (NCBI) 158401
Atlas_Id 61331
Location 9q31.3  [Link to chromosome band 9q31]
Location_base_pair Starts at 111686519 and ends at 111759533 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C9orf84   26535
Cards
Entrez_Gene (NCBI)C9orf84  158401  chromosome 9 open reading frame 84
Aliases
GeneCards (Weizmann)C9orf84
Ensembl hg19 (Hinxton)ENSG00000165181 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165181 [Gene_View]  chr9:111686519-111759533 [Contig_View]  C9orf84 [Vega]
ICGC DataPortalENSG00000165181
TCGA cBioPortalC9orf84
AceView (NCBI)C9orf84
Genatlas (Paris)C9orf84
WikiGenes158401
SOURCE (Princeton)C9orf84
Genetics Home Reference (NIH)C9orf84
Genomic and cartography
GoldenPath hg38 (UCSC)C9orf84  -     chr9:111686519-111759533 -  9q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C9orf84  -     9q31.3   [Description]    (hg19-Feb_2009)
EnsemblC9orf84 - 9q31.3 [CytoView hg19]  C9orf84 - 9q31.3 [CytoView hg38]
Mapping of homologs : NCBIC9orf84 [Mapview hg19]  C9orf84 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK057341 AK126055 AL704322 AL833535 BC041858
RefSeq transcript (Entrez)NM_001080551 NM_173521
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C9orf84
Cluster EST : UnigeneHs.428209 [ NCBI ]
CGAP (NCI)Hs.428209
Alternative Splicing GalleryENSG00000165181
Gene ExpressionC9orf84 [ NCBI-GEO ]   C9orf84 [ EBI - ARRAY_EXPRESS ]   C9orf84 [ SEEK ]   C9orf84 [ MEM ]
Gene Expression Viewer (FireBrowse)C9orf84 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)158401
GTEX Portal (Tissue expression)C9orf84
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VXU9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VXU9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VXU9
Splice isoforms : SwissVarQ5VXU9
PhosPhoSitePlusQ5VXU9
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C9orf84
DMDM Disease mutations158401
Blocks (Seattle)C9orf84
SuperfamilyQ5VXU9
Human Protein AtlasENSG00000165181
Peptide AtlasQ5VXU9
HPRD12982
IPIIPI00658203   IPI00065383   IPI01015898   IPI00746119   IPI00853092   
Protein Interaction databases
DIP (DOE-UCLA)Q5VXU9
IntAct (EBI)Q5VXU9
FunCoupENSG00000165181
BioGRIDC9orf84
STRING (EMBL)C9orf84
ZODIACC9orf84
Ontologies - Pathways
QuickGOQ5VXU9
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC9orf84
Atlas of Cancer Signalling NetworkC9orf84
Wikipedia pathwaysC9orf84
Orthology - Evolution
OrthoDB158401
GeneTree (enSembl)ENSG00000165181
Phylogenetic Trees/Animal Genes : TreeFamC9orf84
HOVERGENQ5VXU9
HOGENOMQ5VXU9
Homologs : HomoloGeneC9orf84
Homology/Alignments : Family Browser (UCSC)C9orf84
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC9orf84 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C9orf84
dbVarC9orf84
ClinVarC9orf84
1000_GenomesC9orf84 
Exome Variant ServerC9orf84
ExAC (Exome Aggregation Consortium)C9orf84 (select the gene name)
Genetic variants : HAPMAP158401
Genomic Variants (DGV)C9orf84 [DGVbeta]
DECIPHERC9orf84 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC9orf84 
Mutations
ICGC Data PortalC9orf84 
TCGA Data PortalC9orf84 
Broad Tumor PortalC9orf84
OASIS PortalC9orf84 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC9orf84  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC9orf84
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C9orf84
DgiDB (Drug Gene Interaction Database)C9orf84
DoCM (Curated mutations)C9orf84 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C9orf84 (select a term)
intoGenC9orf84
Cancer3DC9orf84(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC9orf84
Genetic Testing Registry C9orf84
NextProtQ5VXU9 [Medical]
TSGene158401
GENETestsC9orf84
Target ValidationC9orf84
Huge Navigator C9orf84 [HugePedia]
snp3D : Map Gene to Disease158401
BioCentury BCIQC9orf84
ClinGenC9orf84
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD158401
Chemical/Pharm GKB GenePA134876692
Clinical trialC9orf84
Miscellaneous
canSAR (ICR)C9orf84 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC9orf84
EVEXC9orf84
GoPubMedC9orf84
iHOPC9orf84
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:41:47 CEST 2017

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