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C9orf85 (chromosome 9 open reading frame 85)

Identity

Alias_symbol (synonym)MGC61599
Other alias-
HGNC (Hugo) C9orf85
LocusID (NCBI) 138241
Atlas_Id 61332
Location 9q21.13  [Link to chromosome band 9q21]
Location_base_pair Starts at 74526423 and ends at 74588371 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
C9orf85 (9q21.13) / ARHGAP10 (4q31.23)GDA (9q21.13) / C9orf85 (9q21.13)MAP1B (5q13.2) / C9orf85 (9q21.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C9orf85   28784
Cards
Entrez_Gene (NCBI)C9orf85  138241  chromosome 9 open reading frame 85
Aliases
GeneCards (Weizmann)C9orf85
Ensembl hg19 (Hinxton)ENSG00000155621 [Gene_View]  chr9:74526423-74588371 [Contig_View]  C9orf85 [Vega]
Ensembl hg38 (Hinxton)ENSG00000155621 [Gene_View]  chr9:74526423-74588371 [Contig_View]  C9orf85 [Vega]
ICGC DataPortalENSG00000155621
TCGA cBioPortalC9orf85
AceView (NCBI)C9orf85
Genatlas (Paris)C9orf85
WikiGenes138241
SOURCE (Princeton)C9orf85
Genetics Home Reference (NIH)C9orf85
Genomic and cartography
GoldenPath hg19 (UCSC)C9orf85  -     chr9:74526423-74588371 +  9q21.13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C9orf85  -     9q21.13   [Description]    (hg38-Dec_2013)
EnsemblC9orf85 - 9q21.13 [CytoView hg19]  C9orf85 - 9q21.13 [CytoView hg38]
Mapping of homologs : NCBIC9orf85 [Mapview hg19]  C9orf85 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK307186 AK311206 BC010179 BC028019 BC052375
RefSeq transcript (Entrez)NM_182505 NM_198394
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929366
Consensus coding sequences : CCDS (NCBI)C9orf85
Cluster EST : UnigeneHs.534190 [ NCBI ]
CGAP (NCI)Hs.534190
Alternative Splicing GalleryENSG00000155621
Gene ExpressionC9orf85 [ NCBI-GEO ]   C9orf85 [ EBI - ARRAY_EXPRESS ]   C9orf85 [ SEEK ]   C9orf85 [ MEM ]
Gene Expression Viewer (FireBrowse)C9orf85 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)138241
GTEX Portal (Tissue expression)C9orf85
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96MD7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96MD7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96MD7
Splice isoforms : SwissVarQ96MD7
PhosPhoSitePlusQ96MD7
Domains : Interpro (EBI)DUF2039   
Domain families : Pfam (Sanger)DUF2039 (PF10217)   
Domain families : Pfam (NCBI)pfam10217   
Conserved Domain (NCBI)C9orf85
DMDM Disease mutations138241
Blocks (Seattle)C9orf85
SuperfamilyQ96MD7
Human Protein AtlasENSG00000155621
Peptide AtlasQ96MD7
HPRD12983
IPIIPI00384182   IPI00412597   IPI00307680   IPI00982842   IPI00641721   IPI00981374   
Protein Interaction databases
DIP (DOE-UCLA)Q96MD7
IntAct (EBI)Q96MD7
FunCoupENSG00000155621
BioGRIDC9orf85
STRING (EMBL)C9orf85
ZODIACC9orf85
Ontologies - Pathways
QuickGOQ96MD7
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC9orf85
Atlas of Cancer Signalling NetworkC9orf85
Wikipedia pathwaysC9orf85
Orthology - Evolution
OrthoDB138241
GeneTree (enSembl)ENSG00000155621
Phylogenetic Trees/Animal Genes : TreeFamC9orf85
HOVERGENQ96MD7
HOGENOMQ96MD7
Homologs : HomoloGeneC9orf85
Homology/Alignments : Family Browser (UCSC)C9orf85
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC9orf85 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C9orf85
dbVarC9orf85
ClinVarC9orf85
1000_GenomesC9orf85 
Exome Variant ServerC9orf85
ExAC (Exome Aggregation Consortium)C9orf85 (select the gene name)
Genetic variants : HAPMAP138241
Genomic Variants (DGV)C9orf85 [DGVbeta]
DECIPHER (Syndromes)9:74526423-74588371  ENSG00000155621
CONAN: Copy Number AnalysisC9orf85 
Mutations
ICGC Data PortalC9orf85 
TCGA Data PortalC9orf85 
Broad Tumor PortalC9orf85
OASIS PortalC9orf85 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC9orf85  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC9orf85
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C9orf85
DgiDB (Drug Gene Interaction Database)C9orf85
DoCM (Curated mutations)C9orf85 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C9orf85 (select a term)
intoGenC9orf85
Cancer3DC9orf85(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC9orf85
Genetic Testing Registry C9orf85
NextProtQ96MD7 [Medical]
TSGene138241
GENETestsC9orf85
Huge Navigator C9orf85 [HugePedia]
snp3D : Map Gene to Disease138241
BioCentury BCIQC9orf85
ClinGenC9orf85
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD138241
Chemical/Pharm GKB GenePA134985322
Clinical trialC9orf85
Miscellaneous
canSAR (ICR)C9orf85 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC9orf85
EVEXC9orf85
GoPubMedC9orf85
iHOPC9orf85
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:57:50 CET 2017

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