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C9orf89 (chromosome 9 open reading frame 89)

Identity

Other aliasBinCARD
bA370F5.1
HGNC (Hugo) C9orf89
LocusID (NCBI) 84270
Atlas_Id 61333
Location 9q22.31  [Link to chromosome band 9q22]
Location_base_pair Starts at 95858450 and ends at 95875565 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C9orf89   28148
Cards
Entrez_Gene (NCBI)C9orf89  84270  chromosome 9 open reading frame 89
AliasesBinCARD; bA370F5.1
GeneCards (Weizmann)C9orf89
Ensembl hg19 (Hinxton)ENSG00000165233 [Gene_View]  chr9:95858450-95875565 [Contig_View]  C9orf89 [Vega]
Ensembl hg38 (Hinxton)ENSG00000165233 [Gene_View]  chr9:95858450-95875565 [Contig_View]  C9orf89 [Vega]
ICGC DataPortalENSG00000165233
TCGA cBioPortalC9orf89
AceView (NCBI)C9orf89
Genatlas (Paris)C9orf89
WikiGenes84270
SOURCE (Princeton)C9orf89
Genetics Home Reference (NIH)C9orf89
Genomic and cartography
GoldenPath hg19 (UCSC)C9orf89  -     chr9:95858450-95875565 +  9q22.31   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C9orf89  -     9q22.31   [Description]    (hg38-Dec_2013)
EnsemblC9orf89 - 9q22.31 [CytoView hg19]  C9orf89 - 9q22.31 [CytoView hg38]
Mapping of homologs : NCBIC9orf89 [Mapview hg19]  C9orf89 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK057716 AK091611 AK097977 AK128259 AW207349
RefSeq transcript (Entrez)NM_032310
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929366
Consensus coding sequences : CCDS (NCBI)C9orf89
Cluster EST : UnigeneHs.434213 [ NCBI ]
CGAP (NCI)Hs.434213
Alternative Splicing GalleryENSG00000165233
Gene ExpressionC9orf89 [ NCBI-GEO ]   C9orf89 [ EBI - ARRAY_EXPRESS ]   C9orf89 [ SEEK ]   C9orf89 [ MEM ]
Gene Expression Viewer (FireBrowse)C9orf89 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84270
GTEX Portal (Tissue expression)C9orf89
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96LW7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96LW7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96LW7
Splice isoforms : SwissVarQ96LW7
PhosPhoSitePlusQ96LW7
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C9orf89
DMDM Disease mutations84270
Blocks (Seattle)C9orf89
PDB (SRS)4DWN    4FH0   
PDB (PDBSum)4DWN    4FH0   
PDB (IMB)4DWN    4FH0   
PDB (RSDB)4DWN    4FH0   
Structural Biology KnowledgeBase4DWN    4FH0   
SCOP (Structural Classification of Proteins)4DWN    4FH0   
CATH (Classification of proteins structures)4DWN    4FH0   
SuperfamilyQ96LW7
Human Protein AtlasENSG00000165233
Peptide AtlasQ96LW7
HPRD12985
IPIIPI00336153   IPI00177808   
Protein Interaction databases
DIP (DOE-UCLA)Q96LW7
IntAct (EBI)Q96LW7
FunCoupENSG00000165233
BioGRIDC9orf89
STRING (EMBL)C9orf89
ZODIACC9orf89
Ontologies - Pathways
QuickGOQ96LW7
Ontology : AmiGOnucleus  endoplasmic reticulum membrane  cytosol  integral component of membrane  mitochondrial membrane  negative regulation of I-kappaB kinase/NF-kappaB signaling  CARD domain binding  
Ontology : EGO-EBInucleus  endoplasmic reticulum membrane  cytosol  integral component of membrane  mitochondrial membrane  negative regulation of I-kappaB kinase/NF-kappaB signaling  CARD domain binding  
NDEx NetworkC9orf89
Atlas of Cancer Signalling NetworkC9orf89
Wikipedia pathwaysC9orf89
Orthology - Evolution
OrthoDB84270
GeneTree (enSembl)ENSG00000165233
Phylogenetic Trees/Animal Genes : TreeFamC9orf89
HOVERGENQ96LW7
HOGENOMQ96LW7
Homologs : HomoloGeneC9orf89
Homology/Alignments : Family Browser (UCSC)C9orf89
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC9orf89 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C9orf89
dbVarC9orf89
ClinVarC9orf89
1000_GenomesC9orf89 
Exome Variant ServerC9orf89
ExAC (Exome Aggregation Consortium)C9orf89 (select the gene name)
Genetic variants : HAPMAP84270
Genomic Variants (DGV)C9orf89 [DGVbeta]
DECIPHER (Syndromes)9:95858450-95875565  ENSG00000165233
CONAN: Copy Number AnalysisC9orf89 
Mutations
ICGC Data PortalC9orf89 
TCGA Data PortalC9orf89 
Broad Tumor PortalC9orf89
OASIS PortalC9orf89 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC9orf89  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC9orf89
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C9orf89
DgiDB (Drug Gene Interaction Database)C9orf89
DoCM (Curated mutations)C9orf89 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C9orf89 (select a term)
intoGenC9orf89
Cancer3DC9orf89(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC9orf89
Genetic Testing Registry C9orf89
NextProtQ96LW7 [Medical]
TSGene84270
GENETestsC9orf89
Huge Navigator C9orf89 [HugePedia]
snp3D : Map Gene to Disease84270
BioCentury BCIQC9orf89
ClinGenC9orf89
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84270
Chemical/Pharm GKB GenePA134909664
Clinical trialC9orf89
Miscellaneous
canSAR (ICR)C9orf89 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC9orf89
EVEXC9orf89
GoPubMedC9orf89
iHOPC9orf89
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:57:50 CET 2017

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