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C9orf9 (chromosome 9 open reading frame 9)

Identity

Other aliasMast
HGNC (Hugo) C9orf9
LocusID (NCBI) 11092
Atlas_Id 61334
Location 9q34.13  [Link to chromosome band 9q34]
Location_base_pair Starts at 135754290 and ends at 135765418 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
C9orf9 (9q34.13) / RMND5A (2p11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C9orf9   1367
Cards
Entrez_Gene (NCBI)C9orf9  11092  chromosome 9 open reading frame 9
AliasesMast
GeneCards (Weizmann)C9orf9
Ensembl hg19 (Hinxton)ENSG00000165698 [Gene_View]  chr9:135754290-135765418 [Contig_View]  C9orf9 [Vega]
Ensembl hg38 (Hinxton)ENSG00000165698 [Gene_View]  chr9:135754290-135765418 [Contig_View]  C9orf9 [Vega]
ICGC DataPortalENSG00000165698
TCGA cBioPortalC9orf9
AceView (NCBI)C9orf9
Genatlas (Paris)C9orf9
WikiGenes11092
SOURCE (Princeton)C9orf9
Genetics Home Reference (NIH)C9orf9
Genomic and cartography
GoldenPath hg19 (UCSC)C9orf9  -     chr9:135754290-135765418 +  9q34.13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C9orf9  -     9q34.13   [Description]    (hg38-Dec_2013)
EnsemblC9orf9 - 9q34.13 [CytoView hg19]  C9orf9 - 9q34.13 [CytoView hg38]
Mapping of homologs : NCBIC9orf9 [Mapview hg19]  C9orf9 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ011375 AK075259 AK130389 BC012940 CR457210
RefSeq transcript (Entrez)NM_018956
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929367
Consensus coding sequences : CCDS (NCBI)C9orf9
Cluster EST : UnigeneHs.62595 [ NCBI ]
CGAP (NCI)Hs.62595
Alternative Splicing GalleryENSG00000165698
Gene ExpressionC9orf9 [ NCBI-GEO ]   C9orf9 [ EBI - ARRAY_EXPRESS ]   C9orf9 [ SEEK ]   C9orf9 [ MEM ]
Gene Expression Viewer (FireBrowse)C9orf9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11092
GTEX Portal (Tissue expression)C9orf9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96E40   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96E40  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96E40
Splice isoforms : SwissVarQ96E40
PhosPhoSitePlusQ96E40
Domains : Interpro (EBI)DUF4561   
Domain families : Pfam (Sanger)DUF4561 (PF15120)   
Domain families : Pfam (NCBI)pfam15120   
Conserved Domain (NCBI)C9orf9
DMDM Disease mutations11092
Blocks (Seattle)C9orf9
SuperfamilyQ96E40
Human Protein AtlasENSG00000165698
Peptide AtlasQ96E40
HPRD12986
IPIIPI00101171   IPI00395817   IPI00442585   
Protein Interaction databases
DIP (DOE-UCLA)Q96E40
IntAct (EBI)Q96E40
FunCoupENSG00000165698
BioGRIDC9orf9
STRING (EMBL)C9orf9
ZODIACC9orf9
Ontologies - Pathways
QuickGOQ96E40
Ontology : AmiGOacrosomal vesicle  protein binding  cytoplasmic microtubule  
Ontology : EGO-EBIacrosomal vesicle  protein binding  cytoplasmic microtubule  
NDEx NetworkC9orf9
Atlas of Cancer Signalling NetworkC9orf9
Wikipedia pathwaysC9orf9
Orthology - Evolution
OrthoDB11092
GeneTree (enSembl)ENSG00000165698
Phylogenetic Trees/Animal Genes : TreeFamC9orf9
HOVERGENQ96E40
HOGENOMQ96E40
Homologs : HomoloGeneC9orf9
Homology/Alignments : Family Browser (UCSC)C9orf9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC9orf9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C9orf9
dbVarC9orf9
ClinVarC9orf9
1000_GenomesC9orf9 
Exome Variant ServerC9orf9
ExAC (Exome Aggregation Consortium)C9orf9 (select the gene name)
Genetic variants : HAPMAP11092
Genomic Variants (DGV)C9orf9 [DGVbeta]
DECIPHER (Syndromes)9:135754290-135765418  ENSG00000165698
CONAN: Copy Number AnalysisC9orf9 
Mutations
ICGC Data PortalC9orf9 
TCGA Data PortalC9orf9 
Broad Tumor PortalC9orf9
OASIS PortalC9orf9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC9orf9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC9orf9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C9orf9
DgiDB (Drug Gene Interaction Database)C9orf9
DoCM (Curated mutations)C9orf9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C9orf9 (select a term)
intoGenC9orf9
Cancer3DC9orf9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC9orf9
Genetic Testing Registry C9orf9
NextProtQ96E40 [Medical]
TSGene11092
GENETestsC9orf9
Huge Navigator C9orf9 [HugePedia]
snp3D : Map Gene to Disease11092
BioCentury BCIQC9orf9
ClinGenC9orf9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11092
Chemical/Pharm GKB GenePA25983
Clinical trialC9orf9
Miscellaneous
canSAR (ICR)C9orf9 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC9orf9
EVEXC9orf9
GoPubMedC9orf9
iHOPC9orf9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:57:50 CET 2017

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