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C9orf91 (chromosome 9 open reading frame 91)

Identity

Other alias-
HGNC (Hugo) C9orf91
LocusID (NCBI) 203197
Atlas_Id 61335
Location 9q32  [Link to chromosome band 9q32]
Location_base_pair Starts at 117373706 and ends at 117408703 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
C9orf91 (9q32) / C14orf37 (14q23.1)C9orf91 (9q32) / ZNF532 (18q21.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C9orf91   24513
Cards
Entrez_Gene (NCBI)C9orf91  203197  chromosome 9 open reading frame 91
Aliases
GeneCards (Weizmann)C9orf91
Ensembl hg19 (Hinxton)ENSG00000157693 [Gene_View]  chr9:117373706-117408703 [Contig_View]  C9orf91 [Vega]
Ensembl hg38 (Hinxton)ENSG00000157693 [Gene_View]  chr9:117373706-117408703 [Contig_View]  C9orf91 [Vega]
ICGC DataPortalENSG00000157693
TCGA cBioPortalC9orf91
AceView (NCBI)C9orf91
Genatlas (Paris)C9orf91
WikiGenes203197
SOURCE (Princeton)C9orf91
Genetics Home Reference (NIH)C9orf91
Genomic and cartography
GoldenPath hg19 (UCSC)C9orf91  -     chr9:117373706-117408703 +  9q32   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C9orf91  -     9q32   [Description]    (hg38-Dec_2013)
EnsemblC9orf91 - 9q32 [CytoView hg19]  C9orf91 - 9q32 [CytoView hg38]
Mapping of homologs : NCBIC9orf91 [Mapview hg19]  C9orf91 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF038174 AK095364 AK098022 AK289383 AL557166
RefSeq transcript (Entrez)NM_153045
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929366
Consensus coding sequences : CCDS (NCBI)C9orf91
Cluster EST : UnigeneHs.522357 [ NCBI ]
CGAP (NCI)Hs.522357
Alternative Splicing GalleryENSG00000157693
Gene ExpressionC9orf91 [ NCBI-GEO ]   C9orf91 [ EBI - ARRAY_EXPRESS ]   C9orf91 [ SEEK ]   C9orf91 [ MEM ]
Gene Expression Viewer (FireBrowse)C9orf91 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)203197
GTEX Portal (Tissue expression)C9orf91
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VZI3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VZI3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VZI3
Splice isoforms : SwissVarQ5VZI3
PhosPhoSitePlusQ5VZI3
Domains : Interpro (EBI)DUF4481   
Domain families : Pfam (Sanger)DUF4481 (PF14800)   
Domain families : Pfam (NCBI)pfam14800   
Conserved Domain (NCBI)C9orf91
DMDM Disease mutations203197
Blocks (Seattle)C9orf91
SuperfamilyQ5VZI3
Human Protein AtlasENSG00000157693
Peptide AtlasQ5VZI3
HPRD12988
IPIIPI00643144   IPI00829919   IPI00337642   
Protein Interaction databases
DIP (DOE-UCLA)Q5VZI3
IntAct (EBI)Q5VZI3
FunCoupENSG00000157693
BioGRIDC9orf91
STRING (EMBL)C9orf91
ZODIACC9orf91
Ontologies - Pathways
QuickGOQ5VZI3
Ontology : AmiGOmolecular_function  cellular_component  biological_process  integral component of membrane  
Ontology : EGO-EBImolecular_function  cellular_component  biological_process  integral component of membrane  
NDEx NetworkC9orf91
Atlas of Cancer Signalling NetworkC9orf91
Wikipedia pathwaysC9orf91
Orthology - Evolution
OrthoDB203197
GeneTree (enSembl)ENSG00000157693
Phylogenetic Trees/Animal Genes : TreeFamC9orf91
HOVERGENQ5VZI3
HOGENOMQ5VZI3
Homologs : HomoloGeneC9orf91
Homology/Alignments : Family Browser (UCSC)C9orf91
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC9orf91 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C9orf91
dbVarC9orf91
ClinVarC9orf91
1000_GenomesC9orf91 
Exome Variant ServerC9orf91
ExAC (Exome Aggregation Consortium)C9orf91 (select the gene name)
Genetic variants : HAPMAP203197
Genomic Variants (DGV)C9orf91 [DGVbeta]
DECIPHER (Syndromes)9:117373706-117408703  ENSG00000157693
CONAN: Copy Number AnalysisC9orf91 
Mutations
ICGC Data PortalC9orf91 
TCGA Data PortalC9orf91 
Broad Tumor PortalC9orf91
OASIS PortalC9orf91 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC9orf91  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC9orf91
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C9orf91
DgiDB (Drug Gene Interaction Database)C9orf91
DoCM (Curated mutations)C9orf91 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C9orf91 (select a term)
intoGenC9orf91
Cancer3DC9orf91(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC9orf91
Genetic Testing Registry C9orf91
NextProtQ5VZI3 [Medical]
TSGene203197
GENETestsC9orf91
Huge Navigator C9orf91 [HugePedia]
snp3D : Map Gene to Disease203197
BioCentury BCIQC9orf91
ClinGenC9orf91
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD203197
Chemical/Pharm GKB GenePA134931542
Clinical trialC9orf91
Miscellaneous
canSAR (ICR)C9orf91 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC9orf91
EVEXC9orf91
GoPubMedC9orf91
iHOPC9orf91
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:57:50 CET 2017

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