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C9orf92 (chromosome 9 open reading frame 92)

Identity

Other aliasEm:AL513424.1
HGNC (Hugo) C9orf92
LocusID (NCBI) 100129385
Atlas_Id 56642
Location 9p22.3  [Link to chromosome band 9p22]
Location_base_pair Starts at 16203935 and ends at 16253107 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C9orf92   19054
Cards
Entrez_Gene (NCBI)C9orf92  100129385  chromosome 9 open reading frame 92
AliasesEm:AL513424.1
GeneCards (Weizmann)C9orf92
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr9:16203935-16253107 [Contig_View]  C9orf92 [Vega]
TCGA cBioPortalC9orf92
AceView (NCBI)C9orf92
Genatlas (Paris)C9orf92
WikiGenes100129385
SOURCE (Princeton)C9orf92
Genetics Home Reference (NIH)C9orf92
Genomic and cartography
GoldenPath hg38 (UCSC)C9orf92  -     chr9:16203935-16253107 -  9p22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C9orf92  -     9p22.3   [Description]    (hg19-Feb_2009)
EnsemblC9orf92 - 9p22.3 [CytoView hg19]  C9orf92 - 9p22.3 [CytoView hg38]
Mapping of homologs : NCBIC9orf92 [Mapview hg19]  C9orf92 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI167486 AW779702 BG207459
RefSeq transcript (Entrez)NM_001271829
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C9orf92
Cluster EST : UnigeneHs.586441 [ NCBI ]
CGAP (NCI)Hs.586441
Gene ExpressionC9orf92 [ NCBI-GEO ]   C9orf92 [ EBI - ARRAY_EXPRESS ]   C9orf92 [ SEEK ]   C9orf92 [ MEM ]
Gene Expression Viewer (FireBrowse)C9orf92 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100129385
GTEX Portal (Tissue expression)C9orf92
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NGG3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NGG3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NGG3
Splice isoforms : SwissVarA6NGG3
PhosPhoSitePlusA6NGG3
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C9orf92
DMDM Disease mutations100129385
Blocks (Seattle)C9orf92
SuperfamilyA6NGG3
Peptide AtlasA6NGG3
IPIIPI00647376   IPI00644083   IPI00645741   
Protein Interaction databases
DIP (DOE-UCLA)A6NGG3
IntAct (EBI)A6NGG3
BioGRIDC9orf92
STRING (EMBL)C9orf92
ZODIACC9orf92
Ontologies - Pathways
QuickGOA6NGG3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC9orf92
Atlas of Cancer Signalling NetworkC9orf92
Wikipedia pathwaysC9orf92
Orthology - Evolution
OrthoDB100129385
Phylogenetic Trees/Animal Genes : TreeFamC9orf92
HOVERGENA6NGG3
HOGENOMA6NGG3
Homologs : HomoloGeneC9orf92
Homology/Alignments : Family Browser (UCSC)C9orf92
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC9orf92 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C9orf92
dbVarC9orf92
ClinVarC9orf92
1000_GenomesC9orf92 
Exome Variant ServerC9orf92
ExAC (Exome Aggregation Consortium)C9orf92 (select the gene name)
Genetic variants : HAPMAP100129385
Genomic Variants (DGV)C9orf92 [DGVbeta]
DECIPHERC9orf92 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC9orf92 
Mutations
ICGC Data PortalC9orf92 
TCGA Data PortalC9orf92 
Broad Tumor PortalC9orf92
OASIS PortalC9orf92 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC9orf92  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC9orf92
BioMutasearch C9orf92
DgiDB (Drug Gene Interaction Database)C9orf92
DoCM (Curated mutations)C9orf92 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C9orf92 (select a term)
intoGenC9orf92
Cancer3DC9orf92(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC9orf92
Genetic Testing Registry C9orf92
NextProtA6NGG3 [Medical]
TSGene100129385
GENETestsC9orf92
Target ValidationC9orf92
Huge Navigator C9orf92 [HugePedia]
snp3D : Map Gene to Disease100129385
BioCentury BCIQC9orf92
ClinGenC9orf92
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100129385
Chemical/Pharm GKB GenePA134880670
Clinical trialC9orf92
Miscellaneous
canSAR (ICR)C9orf92 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC9orf92
EVEXC9orf92
GoPubMedC9orf92
iHOPC9orf92
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:26:22 CEST 2017

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