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CA10 (carbonic anhydrase 10)

Identity

Other aliasCA-RPX
CARPX
HUCEP-15
HGNC (Hugo) CA10
LocusID (NCBI) 56934
Atlas_Id 57185
Location 17q21.33  [Link to chromosome band 17q21]
Location_base_pair Starts at 51630313 and ends at 52158772 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CA10 (17q21.33) / UBN1 (16p13.3)LLGL2 (17q25.1) / CA10 (17q21.33)LRRC1 (6p12.1) / CA10 (17q21.33)
MSI2 (17q22) / CA10 (17q21.33)NXN (17p13.3) / CA10 (17q21.33)PLIN2 (9p22.1) / CA10 (17q21.33)
PRKAG2 (7q36.1) / CA10 (17q21.33)RAB38 (11q14.2) / CA10 (17q21.33)RARA (17q21.2) / CA10 (17q21.33)
RHOT1 (17q11.2) / CA10 (17q21.33)TLK2 (17q23.2) / CA10 (17q21.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 6 ]
  t(7;17)(q36;q22) PRKAG2/CA10
t(9;17)(p22;q22) PLIN2/CA10
t(11;17)(q14;q22) RAB38/CA10
t(17;17)(q11;q22) RHOT1/CA10
t(17;17)(q21;q22) RARA/CA10
t(17;17)(q22;q25) LLGL2/CA10

External links

Nomenclature
HGNC (Hugo)CA10   1369
Cards
Entrez_Gene (NCBI)CA10  56934  carbonic anhydrase 10
AliasesCA-RPX; CARPX; HUCEP-15
GeneCards (Weizmann)CA10
Ensembl hg19 (Hinxton)ENSG00000154975 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000154975 [Gene_View]  ENSG00000154975 [Sequence]  chr17:51630313-52158772 [Contig_View]  CA10 [Vega]
ICGC DataPortalENSG00000154975
TCGA cBioPortalCA10
AceView (NCBI)CA10
Genatlas (Paris)CA10
WikiGenes56934
SOURCE (Princeton)CA10
Genetics Home Reference (NIH)CA10
Genomic and cartography
GoldenPath hg38 (UCSC)CA10  -     chr17:51630313-52158772 -  17q21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CA10  -     17q21.33   [Description]    (hg19-Feb_2009)
EnsemblCA10 - 17q21.33 [CytoView hg19]  CA10 - 17q21.33 [CytoView hg38]
Mapping of homologs : NCBICA10 [Mapview hg19]  CA10 [Mapview hg38]
OMIM604642   
Gene and transcription
Genbank (Entrez)AB001597 AB036836 AF064854 AF288385 AK294652
RefSeq transcript (Entrez)NM_001082533 NM_001082534 NM_020178
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CA10
Cluster EST : UnigeneHs.463466 [ NCBI ]
CGAP (NCI)Hs.463466
Alternative Splicing GalleryENSG00000154975
Gene ExpressionCA10 [ NCBI-GEO ]   CA10 [ EBI - ARRAY_EXPRESS ]   CA10 [ SEEK ]   CA10 [ MEM ]
Gene Expression Viewer (FireBrowse)CA10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56934
GTEX Portal (Tissue expression)CA10
Human Protein AtlasENSG00000154975-CA10 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NS85   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NS85  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NS85
Splice isoforms : SwissVarQ9NS85
PhosPhoSitePlusQ9NS85
Domaine pattern : Prosite (Expaxy)ALPHA_CA_2 (PS51144)   
Domains : Interpro (EBI)CA10    Carbonic_anhydrase_a    Carbonic_anhydrase_a-class    Carbonic_anhydrase_a_sf   
Domain families : Pfam (Sanger)Carb_anhydrase (PF00194)   
Domain families : Pfam (NCBI)pfam00194   
Domain families : Smart (EMBL)Carb_anhydrase (SM01057)  
Conserved Domain (NCBI)CA10
DMDM Disease mutations56934
Blocks (Seattle)CA10
SuperfamilyQ9NS85
Human Protein Atlas [tissue]ENSG00000154975-CA10 [tissue]
Peptide AtlasQ9NS85
IPIIPI00024601   IPI00816009   IPI00470819   
Protein Interaction databases
DIP (DOE-UCLA)Q9NS85
IntAct (EBI)Q9NS85
FunCoupENSG00000154975
BioGRIDCA10
STRING (EMBL)CA10
ZODIACCA10
Ontologies - Pathways
QuickGOQ9NS85
Ontology : AmiGOmolecular_function  carbonate dehydratase activity  cellular_component  brain development  zinc ion binding  
Ontology : EGO-EBImolecular_function  carbonate dehydratase activity  cellular_component  brain development  zinc ion binding  
NDEx NetworkCA10
Atlas of Cancer Signalling NetworkCA10
Wikipedia pathwaysCA10
Orthology - Evolution
OrthoDB56934
GeneTree (enSembl)ENSG00000154975
Phylogenetic Trees/Animal Genes : TreeFamCA10
HOVERGENQ9NS85
HOGENOMQ9NS85
Homologs : HomoloGeneCA10
Homology/Alignments : Family Browser (UCSC)CA10
Gene fusions - Rearrangements
Fusion : QuiverCA10
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCA10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CA10
dbVarCA10
ClinVarCA10
1000_GenomesCA10 
Exome Variant ServerCA10
ExAC (Exome Aggregation Consortium)ENSG00000154975
GNOMAD BrowserENSG00000154975
Varsome BrowserCA10
Genetic variants : HAPMAP56934
Genomic Variants (DGV)CA10 [DGVbeta]
DECIPHERCA10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCA10 
Mutations
ICGC Data PortalCA10 
TCGA Data PortalCA10 
Broad Tumor PortalCA10
OASIS PortalCA10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCA10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCA10
BioMutasearch CA10
DgiDB (Drug Gene Interaction Database)CA10
DoCM (Curated mutations)CA10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CA10 (select a term)
intoGenCA10
Cancer3DCA10(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604642   
Orphanet
DisGeNETCA10
MedgenCA10
Genetic Testing Registry CA10
NextProtQ9NS85 [Medical]
TSGene56934
GENETestsCA10
Target ValidationCA10
Huge Navigator CA10 [HugePedia]
snp3D : Map Gene to Disease56934
BioCentury BCIQCA10
ClinGenCA10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56934
Chemical/Pharm GKB GenePA25985
Clinical trialCA10
Miscellaneous
canSAR (ICR)CA10 (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCA10
EVEXCA10
GoPubMedCA10
iHOPCA10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 6 10:55:12 CET 2018
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