Atlas of Genetics and Cytogenetics in Oncology and Haematology

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CA10 (carbonic anhydrase 10)

Identity

Alias_namescarbonic anhydrase X
Alias_symbol (synonym)CARPX
CA-RPX
HUCEP-15
Other alias
HGNC (Hugo) CA10
LocusID (NCBI) 56934
Atlas_Id 61337
Location 17q21.33  [Link to chromosome band 17q21]
Location_base_pair Starts at 51630313 and ends at 52159801 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)		CA10 (17q21.33) / UBN1 (16p13.3)LLGL2 (17q25.1) / CA10 (17q21.33)LRRC1 (6p12.1) / CA10 (17q21.33)
MSI2 (17q22) / CA10 (17q21.33)NXN (17p13.3) / CA10 (17q21.33)PLIN2 (9p22.1) / CA10 (17q21.33)
PRKAG2 (7q36.1) / CA10 (17q21.33)RAB38 (11q14.2) / CA10 (17q21.33)RARA (17q21.2) / CA10 (17q21.33)
RHOT1 (17q11.2) / CA10 (17q21.33)TLK2 (17q23.2) / CA10 (17q21.33)RARA CA10
PRKAG2 CA10RHOT1 CA10RAB38 CA10
PLIN2 CA10MSI2 CA10

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CA10   1369
Cards
Entrez_Gene (NCBI)CA10  56934  carbonic anhydrase 10
AliasesCA-RPX; CARPX; HUCEP-15
GeneCards (Weizmann)CA10
Ensembl hg19 (Hinxton)ENSG00000154975 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000154975 [Gene_View]  chr17:51630313-52159801 [Contig_View]  CA10 [Vega]
ICGC DataPortalENSG00000154975
TCGA cBioPortalCA10
AceView (NCBI)CA10
Genatlas (Paris)CA10
WikiGenes56934
SOURCE (Princeton)CA10
Genetics Home Reference (NIH)CA10
Genomic and cartography
GoldenPath hg38 (UCSC)CA10  -     chr17:51630313-52159801 -  17q21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CA10  -     17q21.33   [Description]    (hg19-Feb_2009)
EnsemblCA10 - 17q21.33 [CytoView hg19]  CA10 - 17q21.33 [CytoView hg38]
Mapping of homologs : NCBICA10 [Mapview hg19]  CA10 [Mapview hg38]
OMIM604642   
Gene and transcription
Genbank (Entrez)AB001597 AB036836 AF064854 AF288385 AK294652
RefSeq transcript (Entrez)NM_001082533 NM_001082534 NM_020178
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CA10
Cluster EST : UnigeneHs.463466 [ NCBI ]
CGAP (NCI)Hs.463466
Alternative Splicing GalleryENSG00000154975
Gene ExpressionCA10 [ NCBI-GEO ]   CA10 [ EBI - ARRAY_EXPRESS ]   CA10 [ SEEK ]   CA10 [ MEM ]
Gene Expression Viewer (FireBrowse)CA10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56934
GTEX Portal (Tissue expression)CA10
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NS85   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NS85  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NS85
Splice isoforms : SwissVarQ9NS85
PhosPhoSitePlusQ9NS85
Domaine pattern : Prosite (Expaxy)ALPHA_CA_2 (PS51144)   
Domains : Interpro (EBI)CA10    Carbonic_anhydrase_a    Carbonic_anhydrase_a-class   
Domain families : Pfam (Sanger)Carb_anhydrase (PF00194)   
Domain families : Pfam (NCBI)pfam00194   
Domain families : Smart (EMBL)Carb_anhydrase (SM01057)  
Conserved Domain (NCBI)CA10
DMDM Disease mutations56934
Blocks (Seattle)CA10
SuperfamilyQ9NS85
Human Protein AtlasENSG00000154975
Peptide AtlasQ9NS85
HPRD05224
IPIIPI00024601   IPI00816009   IPI00470819   
Protein Interaction databases
DIP (DOE-UCLA)Q9NS85
IntAct (EBI)Q9NS85
FunCoupENSG00000154975
BioGRIDCA10
STRING (EMBL)CA10
ZODIACCA10
Ontologies - Pathways
QuickGOQ9NS85
Ontology : AmiGOmolecular_function  cellular_component  brain development  
Ontology : EGO-EBImolecular_function  cellular_component  brain development  
NDEx NetworkCA10
Atlas of Cancer Signalling NetworkCA10
Wikipedia pathwaysCA10
Orthology - Evolution
OrthoDB56934
GeneTree (enSembl)ENSG00000154975
Phylogenetic Trees/Animal Genes : TreeFamCA10
HOVERGENQ9NS85
HOGENOMQ9NS85
Homologs : HomoloGeneCA10
Homology/Alignments : Family Browser (UCSC)CA10
Gene fusions - Rearrangements
Fusion: TCGARARA CA10
Fusion: TCGAPRKAG2 CA10
Fusion: TCGARHOT1 CA10
Fusion: TCGARAB38 CA10
Fusion: TCGAPLIN2 CA10
Fusion: TCGAMSI2 CA10
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCA10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CA10
dbVarCA10
ClinVarCA10
1000_GenomesCA10 
Exome Variant ServerCA10
ExAC (Exome Aggregation Consortium)CA10 (select the gene name)
Genetic variants : HAPMAP56934
Genomic Variants (DGV)CA10 [DGVbeta]
DECIPHERCA10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCA10 
Mutations
ICGC Data PortalCA10 
TCGA Data PortalCA10 
Broad Tumor PortalCA10
OASIS PortalCA10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCA10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCA10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CA10
DgiDB (Drug Gene Interaction Database)CA10
DoCM (Curated mutations)CA10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CA10 (select a term)
intoGenCA10
Cancer3DCA10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604642   
Orphanet
MedgenCA10
Genetic Testing Registry CA10
NextProtQ9NS85 [Medical]
TSGene56934
GENETestsCA10
Target ValidationCA10
Huge Navigator CA10 [HugePedia]
snp3D : Map Gene to Disease56934
BioCentury BCIQCA10
ClinGenCA10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56934
Chemical/Pharm GKB GenePA25985
Clinical trialCA10
Miscellaneous
canSAR (ICR)CA10 (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCA10
EVEXCA10
GoPubMedCA10
iHOPCA10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:41:48 CEST 2017
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